Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    44   5e-05
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    30   0.95 
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    29   2.9  
Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    27   6.7  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 16/27 (59%), Positives = 25/27 (92%)
 Frame = +1

Query: 442 YREILFSDEKIFTVQESYNKQNDKVYA 522
           +R++LF+DEKIF +++S+N QND+VYA
Sbjct: 213 HRKVLFTDEKIFCIEQSFNTQNDRVYA 239


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 252 ISLNSRLHSFYHCWSPNRPRAT 187
           I+ +++L  FY  WSP+RPR+T
Sbjct: 171 ITTHAKLGDFYLVWSPSRPRST 192


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 546 VARFFTTVCVHLIILFVVALLYGKNFFIRKKNFPIFFS 433
           +  FF +   +LI++F+ A  Y KN F   K   I+FS
Sbjct: 15  IVEFFASTFTNLILIFLTAF-YVKNLFGTYKRMVIYFS 51


>Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical
           protein R07E3.3 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 389 SIRRAFKRCPVFLRYARSPKSSFSTLFTVVLLNP 288
           S+R  F +C +  R++ SP+  F +   VV  NP
Sbjct: 76  SLRLTFDQCAIEKRHSTSPRGLFLSTNVVVAFNP 109


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 385 LDEHSNDVLFFFDMPEALSLHLAP 314
           + E SNDV+FFF +   + +++AP
Sbjct: 178 IGELSNDVVFFFSIVNIIQVYIAP 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,831
Number of Sequences: 27780
Number of extensions: 215257
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)