Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   6.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.2  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 337 ALSLHLAPFSPWFCLTPSEGPTVSAYVWD 251
           ALSL L P   W    P  G    +  W+
Sbjct: 26  ALSLSLPPLFGWGSYGPEAGNVSCSVSWE 54


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 277 ALQMGLSRTTVKRVLNEDLGLRAYRRKTG 363
           +L++  + T + R+L+E + L  YR   G
Sbjct: 388 SLRLIPTTTCIARILDEPIELSGYRLTAG 416


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 62  TMQHNNCNT 36
           T+QHNNC T
Sbjct: 293 TIQHNNCLT 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,812
Number of Sequences: 438
Number of extensions: 2892
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)