Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family pro...    29   2.0  
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do...    28   3.6  
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains...    27   6.2  
At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profi...    27   6.2  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    27   6.2  
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ...    27   8.3  
At3g10770.2 68416.m01297 expressed protein                             27   8.3  
At3g10770.1 68416.m01296 expressed protein                             27   8.3  

>At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 977

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -2

Query: 442 IFFPRTASTKRGISSVSGPLDEHSNDVLFFFDMPEALSLHLAPFSPWFCLTP 287
           +FFP+      G     G  D    D+ F    PE L  +  P  PW  LTP
Sbjct: 664 VFFPQKGPRSLGDEIAGGDFD---GDMYFISRNPELLE-NFKPSEPWVSLTP 711


>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 1013

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 214 AVIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDL 333
           A ++ VKA +Q   KR  K++  + G+S      VLN +L
Sbjct: 794 ACLELVKAHVQATGKRPNKIVIFRDGVSDAQFDMVLNVEL 833


>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 609

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 345 ISKKNRTSFE--CSSNGPETEEMPRFVEAVRGKKIS 446
           I+KK R   E    S G +    PRF  AVRG+KI+
Sbjct: 122 IAKKERARVEELIQSKGTQYGSYPRFNVAVRGQKIT 157


>At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profile
           PF03357: SNF7 family
          Length = 200

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 217 VIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRV 318
           V KA+K  ++RN     K LA ++  SR TVKR+
Sbjct: 17  VHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRL 50


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 436 KKYREILFSDEKIFTVQESYNKQNDKVYAHSSEEASN 546
           + Y +I    E ++   ESY   ND  Y+  +EE +N
Sbjct: 550 ESYSDITGGSESMYEDGESYGTMNDSQYSGFNEEPNN 586


>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam PF00067:
           Cytochrome P450
          Length = 399

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 208 TPAVIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKT 360
           TP V+ A    I  NPK  Q+L     G+ +  +K+    DL    Y+  T
Sbjct: 283 TPGVLAATIKLISDNPKVMQELRREHEGIVQDKIKKDETADLTWEDYKSMT 333


>At3g10770.2 68416.m01297 expressed protein
          Length = 325

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 375 IQTMSCFSSICPKP*VFI*HPFHRGSA*PHL-KGQQFLLTFGISLNSRLHSFYH 217
           ++ M    S  P P   I  PFH G   PH+ +G Q  L +G  LN  L  F H
Sbjct: 240 VRVMPSGQSFSPMP---IHIPFHDGFF-PHMPRGHQANLNYGHPLNPALSPFTH 289


>At3g10770.1 68416.m01296 expressed protein
          Length = 333

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 375 IQTMSCFSSICPKP*VFI*HPFHRGSA*PHL-KGQQFLLTFGISLNSRLHSFYH 217
           ++ M    S  P P   I  PFH G   PH+ +G Q  L +G  LN  L  F H
Sbjct: 248 VRVMPSGQSFSPMP---IHIPFHDGFF-PHMPRGHQANLNYGHPLNPALSPFTH 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,323
Number of Sequences: 28952
Number of extensions: 194861
Number of successful extensions: 516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)