Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0174
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    32   0.48 
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    31   0.63 
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    30   1.5  
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    28   7.7  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    28   7.7  

>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/93 (21%), Positives = 38/93 (40%)
 Frame = +3

Query: 390 DAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYK 569
           + P G  P    + ER +     +W   Q                  L+    +L+D  K
Sbjct: 126 EEPQGGAPHDDERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELK 185

Query: 570 SHEEQISKTKAANRESAKNAERAQARGSESSVE 668
             +EQ+  T+ + R + + AE A+A+ + +S +
Sbjct: 186 KAKEQLLSTEHSKRRALQEAEDARAQAAAASAQ 218


>06_03_0038 - 15778446-15778577,15778685-15779020,15779106-15779225,
            15779280-15779765,15779861-15779994,15780111-15780230,
            15784881-15785018,15785404-15786079,15786179-15786340,
            15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +3

Query: 108  HHF--RQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVE-PEVDPAAD----FLAREQNQLA 266
            HH+   Q+VLK  S     F+PK + K  ++   FV+ P++ P ++    ++ R   +  
Sbjct: 865  HHYPLAQKVLKRLSDGFQSFMPKVFKKFGNYHREFVKCPKMVPCSNDCAVYVIRYMERYQ 924

Query: 267  GLEDELETSAPPP 305
            G  D+L     PP
Sbjct: 925  GNPDKLADDFQPP 937


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 186 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 305
           ++ GD   EPE +  ADF+  E+ +   LEDE    E  AP P
Sbjct: 56  EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 588 KSVLHVICTSPPVLSW 541
           K+VLH+ C  PP +SW
Sbjct: 10  KAVLHMDCEKPPAISW 25


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 120 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDE 281
           Q ++++ S + N   P   L + DF  +F+  ++ P   +L R   Q   L+DE
Sbjct: 193 QNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,631,408
Number of Sequences: 37544
Number of extensions: 300566
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)