Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0174
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_31408| Best HMM Match : ENTH (HMM E-Value=0) 29 2.6
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 29 3.4
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 4.5
SB_10292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 28 6.0
SB_43805| Best HMM Match : YscO (HMM E-Value=6) 28 6.0
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39) 28 7.9
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 28 7.9
>SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -2
Query: 237 NLLLDRPQVQRNCLQNHPFSNKLLEQIN*QNESRFSTLFDENDERINKL 91
N+++ P V ++ ++H F + + ++ESR +TL D N++ +KL
Sbjct: 49 NMVISSPSVSQSLSESHKFDIEGFGESVKESESRIATLQDSNEKLCDKL 97
>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 138 YSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDEL 284
+S S + F L ++D+GD+ + + DP+ L + ++AG +D+L
Sbjct: 10 WSESDSRFFADNLLGVEDWGDAISDIKFDPSEVLLGEKDVEMAGTDDDL 58
>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 399 LGSTPTTVFKQEREE 443
+G TP T+FKQEREE
Sbjct: 209 IGETPVTIFKQEREE 223
>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
Length = 1080
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 222 DPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 395
DP ADF + + G D + +A ++++ F DF + S+SA +N + DD+
Sbjct: 720 DPFADFQSASPVKSEGFADFTQATA-----ASTSEVFGDFADFKSSSATQSNNISDDS 772
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 531 LQIAKKELEDWYKSHEEQISKTKAANRESAK 623
LQ K LED K +EQ+ K K A E K
Sbjct: 511 LQTTVKSLEDEIKKEKEQLKKNKVAQDEQGK 541
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 249 EQN-QLAGLEDELETSAPPPAISTSTNGFDDF 341
EQN +L L+D L S+P PA+ S N FDD+
Sbjct: 3654 EQNSRLKALKD-LMWSSPDPAVKLSLNPFDDY 3684
>SB_10292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 273 EDELETSAPPPAISTSTNGFDDFVEVP 353
E E+ET+ P +S + FDDF+ P
Sbjct: 29 ESEIETTPPKTTTQSSIDSFDDFLNPP 55
>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
Length = 315
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 549 ELEDWYKSHEEQISKTKAANRE 614
ELE+W K++ + K KAA RE
Sbjct: 127 ELEEWKKTYHQMKKKAKAAKRE 148
>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
Length = 243
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 549 ELEDWYKSHEEQISKTKAANRE 614
ELE+W K++ + K KAA RE
Sbjct: 127 ELEEWKKTYHQMKKKAKAAKRE 148
>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
Length = 587
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 174 YLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTST 323
YL++D G+S + + D ++F + + + GL+ E + PA+ ST
Sbjct: 119 YLRLDRPGNSSLTLDDDDLSEFGSGKVDAALGLDTEFSGNGSEPAVYNST 168
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +3
Query: 213 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDD 392
P + P DF A EQ+ E PPP + T + V +A+ + + LL+D
Sbjct: 54 PPLPPPPDFDALEQDNSHHHHHGKEELPPPPPLPDLTTPSNTTSTVLAANLSELDSLLED 113
Query: 393 APLGSTPTT 419
P+T
Sbjct: 114 LGKPQYPST 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,573
Number of Sequences: 59808
Number of extensions: 341120
Number of successful extensions: 1029
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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