Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0174
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 46 2e-05
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 37 0.015
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 37 0.015
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 1.3
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 1.3
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024882-1|AAF60940.1| 369|Caenorhabditis elegans Hypothetical ... 29 2.3
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 28 5.2
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 28 5.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 28 6.9
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 6.9
U23178-2|AAK68302.1| 460|Caenorhabditis elegans Hypothetical pr... 28 6.9
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 28 6.9
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 6.9
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 27 9.1
L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 9.1
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 46.0 bits (104), Expect = 2e-05
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 41/190 (21%)
Frame = +3
Query: 222 DPAADFLAREQNQLAGLE-----------DELETSAPPPAISTSTNGF----DDFVEV-- 350
DP ADFLAREQN A + D E AP PA+ D+ V
Sbjct: 3 DPVADFLAREQNLFADFDGAPPAAAAANPDAPEADAPAPALDDDFGDLQIAGDEPPPVVH 62
Query: 351 PSASAFDANGLLDD---APL-------------------GST-PTTVFKQ-EREEPEKIK 458
P+ S D +GL+DD AP GS P+ + R E EKI+
Sbjct: 63 PTDSGVDLDGLVDDNAAAPAIVVPAVEPMVNGNHSASSGGSKGPSPILSTVPRIEAEKIR 122
Query: 459 IWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKAANRESAKNAERA 638
+W+ +Q + AKKELE+WYK E+ + + N ++ K+ +
Sbjct: 123 LWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSHDENLKNEKSNQEL 182
Query: 639 QARGSESSVE 668
A+ + +
Sbjct: 183 FAKQQDGDAQ 192
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 249 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAP 398
EQNQ GL++ L P + + NG D E PS+ F+ L+ D P
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFNDQSLICDYP 448
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 249 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAP 398
EQNQ GL++ L P + + NG D E PS+ F+ L+ D P
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFNDQSLICDYP 448
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 213 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 338
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 213 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 338
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 534 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVE 668
++ KKE ++W K EE K KA +E E+ + G E E
Sbjct: 534 EVDKKEFDEWEKEQEELKKKEKAEKKE---KEEKKKTEGEEEKNE 575
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 534 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSESSVE 668
++ KKE ++W K EE K KA +E E+ + G E E
Sbjct: 550 EVDKKEFDEWEKEQEELKKKEKAEKKE---KEEKKKTEGEEEKNE 591
>AC024882-1|AAF60940.1| 369|Caenorhabditis elegans Hypothetical
protein Y9C9A.17 protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 50 TVTVSIHFHHRLHTNLLILSSFSSKSVENLLSFC*LICSKSL 175
TV VS+ F L TNL+ + +KS + + S+ L+CS S+
Sbjct: 11 TVFVSVSFSFSLATNLIAIYLVITKSPQKIGSYKYLLCSFSI 52
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 REQNQLAGLEDELE-TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 419
R + G DE + APPP S+ G+D+ PSA A D AP G PT+
Sbjct: 80 RARRPARGAYDEGDYKEAPPPTSYPSSGGYDE----PSAPAHDT---APQAPAGPAPTS 131
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 75 TIDCTLIC*FSHHFRQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLARE 251
T++ L C +HH V ++ ++ VPKA + + ++ S ++ +P A A+E
Sbjct: 381 TLNVILECFNAHHQLVTVCELMCDPIHLMVPKARVVLLEYLTSLLDEYTEPGASINAKE 439
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 249 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 395
++ A L DE S PP + +NGFD S S+ NG L DA
Sbjct: 606 QKRSAAALIDEQSRSPPPAKRAHLSNGFD-----KSKSSVSTNGTLGDA 649
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 249 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 395
++ A L DE S PP + +NGFD S S+ NG L DA
Sbjct: 1669 QKRSAAALIDEQSRSPPPAKRAHLSNGFD-----KSKSSVSTNGTLGDA 1712
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 660 YFQILELV--LALHS*QIPCWQL*FWKSVLHVICTSP 556
Y Q+ EL L LH+ +PC + FWK V H TSP
Sbjct: 959 YIQVGELATHLLLHAMTLPCGEEMFWKMV-HRDFTSP 994
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 660 YFQILELV--LALHS*QIPCWQL*FWKSVLHVICTSP 556
Y Q+ EL L LH+ +PC + FWK V H TSP
Sbjct: 959 YIQVGELATHLLLHAMTLPCGEEMFWKMV-HRDFTSP 994
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 273 EDELETSAP-PPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ-EREEP 446
+DE + SA PP +S N DD +VPS SA A + + + P + Q +EP
Sbjct: 1768 DDETQDSAEAPPVLSAEVNS-DDSNDVPSTSA--AAAVSSETAADAEPASAEDQAPTDEP 1824
Query: 447 EKIK 458
E ++
Sbjct: 1825 EPME 1828
>U23178-2|AAK68302.1| 460|Caenorhabditis elegans Hypothetical
protein F08B1.3 protein.
Length = 460
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 400 NGASSNRPLASNADALGTSTKSSNPFVDV 314
NG+ +NR ++ + D GT T SS+P + +
Sbjct: 415 NGSRTNRSVSCSPDECGTLTDSSDPHLTI 443
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 660 YFQILELV--LALHS*QIPCWQL*FWKSVLHVICTSP 556
Y Q+ EL L LH+ +PC + FWK V H TSP
Sbjct: 962 YIQVGELATHLLLHAMTLPCGEEMFWKMV-HRDFTSP 997
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 273 EDELETSAP-PPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ-EREEP 446
+DE + SA PP +S N DD +VPS SA A + + + P + Q +EP
Sbjct: 1768 DDETQDSAEAPPVLSAEVNS-DDSNDVPSTSA--AAAVSSETAADAEPASAEDQAPTDEP 1824
Query: 447 EKIK 458
E ++
Sbjct: 1825 EPME 1828
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 222 DPAADFLAREQNQLAGLE--DELETSAPPPAISTSTNGFDDFVEVPSASAFDA 374
D DF + +++ L DELE++ PP AI + F + + PS ++ D+
Sbjct: 358 DVLLDFFSNHKHECMKLTAWDELESAKPPLAIKILRDAFSN-TDSPSTTSMDS 409
>L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical
protein F10E9.3 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 403 PNGASSNRPLASNADALGTSTKSSNPFVDVE 311
P A S P + ++ + GTST SSN +DV+
Sbjct: 242 PPSAVSPAPGSGSSASSGTSTSSSNGIIDVQ 272
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 531 LQIAKKELEDWYKSHEEQISKTKAANRESAKNA-ERAQARGSESSVE 668
L+ A + ++W K HEE I ++K K A +RA+A E+ ++
Sbjct: 1313 LKKALADCDEWKKKHEESIVESKTEILMERKRAMDRAEACEKETELK 1359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,307
Number of Sequences: 27780
Number of extensions: 274763
Number of successful extensions: 1149
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -