Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0174
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.49 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.49 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.86 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 228 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 344
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 228 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 344
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 357


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 319 LQTGLTILSKYPVHQ--HLMLTVCWMMLHWDPLQQQYSNKN---VRNLR 450
           L  GLT++    V +   L++T  W+ L W+ +  +++  +   VR+LR
Sbjct: 51  LSFGLTLMQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLR 99


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 579 LHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLAI 460
           LH++     V+ W+   FL +F+     S +  +F+L AI
Sbjct: 51  LHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAI 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 588 KSVLHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLA 463
           +S LH+  TSPP  S  S+A  +    PQ  SLL  +   LA
Sbjct: 668 QSQLHLHLTSPPARSPSSQAQASQ--CPQTASLLSSTHSTLA 707


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,703
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)