Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0174
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At4g11890.3 68417.m01892 protein kinase family protein contains ... 31 0.52
At4g11890.2 68417.m01891 protein kinase family protein contains ... 31 0.52
At4g11890.1 68417.m01890 protein kinase family protein contains ... 31 0.52
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe... 30 1.2
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 30 1.2
At3g56760.1 68416.m06313 calcium-dependent protein kinase, putat... 30 1.6
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai... 29 2.1
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 29 2.1
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.1
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 29 2.1
At2g40060.1 68415.m04922 expressed protein 29 2.8
At1g59312.1 68414.m06676 hypothetical protein 28 4.9
At1g58936.1 68414.m06664 hypothetical protein 28 4.9
At1g58643.1 68414.m06656 hypothetical protein 28 4.9
At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related... 27 8.5
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 8.5
>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 312 STSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEK 452
S GFDD V P+A+A + LD + + S P V+++ EE ++
Sbjct: 88 SLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDE 134
>At4g11890.3 68417.m01892 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 354
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 56 TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 151
T SI + H L+ILS K++ NLL FC
Sbjct: 72 TSSIRTERQFHNELIILSKLKHKNLINLLGFC 103
>At4g11890.2 68417.m01891 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 352
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 56 TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 151
T SI + H L+ILS K++ NLL FC
Sbjct: 70 TSSIRTERQFHNELIILSKLKHKNLINLLGFC 101
>At4g11890.1 68417.m01890 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 351
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 56 TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 151
T SI + H L+ILS K++ NLL FC
Sbjct: 69 TSSIRTERQFHNELIILSKLKHKNLINLLGFC 100
>At3g09070.1 68416.m01066 glycine-rich protein similar to
hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
Length = 685
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 264 AGLEDELETSAPPPAISTSTNGFDDFVEVPSAS 362
A ++ +E APPP + TNG D V +P S
Sbjct: 413 ADMQFPVEEPAPPPPVVNQTNGVSDPVIIPGGS 445
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 255 NQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTV 422
NQLA S+P ++S+S++ D + V ++ + + L DD P S P+ V
Sbjct: 588 NQLAHFFSPSPASSPVQSVSSSSSRSKDSIGVEGSNRVNRSLLKDDTPPSSGPSRV 643
>At3g56760.1 68416.m06313 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820
Length = 577
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +3
Query: 249 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFK 428
+Q++ + +E+E + + ++GF + P S F + + + + STP +FK
Sbjct: 11 QQSKNLPISNEIEETPKNSSQKAKSSGFPFYSPSPLPSLFKTSPAVSSSSVSSTPLRIFK 70
Query: 429 QEREEPEKIK 458
+ P K
Sbjct: 71 RPFPPPSPAK 80
>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 371
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 333 DDFVEVPSASAFDANGLLD-DAPLGSTPTTVFKQEREEPEKIKIWRE 470
D+ V +P DA + P G + + R EPE+IK W+E
Sbjct: 98 DELVVIPIFYRLDATNCKRLEGPFGDNFRNLERDYRSEPERIKKWKE 144
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 210 EPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTS 320
+PEV+PAA+ + +Q + E+ +E +A P + S
Sbjct: 383 QPEVNPAAELVVSDQRVASPREERMEPAAATPEAAAS 419
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 531 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSES 659
L++ +KELE+W + + +SK+K + K E + E+
Sbjct: 300 LKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEA 342
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 531 LQIAKKELEDWYKSHEEQISKTKAANRESAKNAERAQARGSES 659
L++ +KELE+W + + +SK+K + K E + E+
Sbjct: 313 LKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEA 355
>At2g40060.1 68415.m04922 expressed protein
Length = 258
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Frame = +3
Query: 366 FDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAK 545
F +NG D P+ P+ + E +E ++ WR + +++ A
Sbjct: 66 FGSNGD-HDGPILPPPS---EMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEAD 121
Query: 546 KELEDWYKSHEEQISKTKAANRESAK----NAERAQARGSES 659
+ E+++K E KAANRE K N E+ A S++
Sbjct: 122 QYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKN 163
>At1g59312.1 68414.m06676 hypothetical protein
Length = 486
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 236 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 96
IC ++ F E+V KI+ Q W N + VD S +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184
>At1g58936.1 68414.m06664 hypothetical protein
Length = 486
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 236 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 96
IC ++ F E+V KI+ Q W N + VD S +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184
>At1g58643.1 68414.m06656 hypothetical protein
Length = 486
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 236 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 96
IC ++ F E+V KI+ Q W N + VD S +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184
>At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 302
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 555 EDWYKSHEEQISKTKAANRE-SAKNAERAQARGSE 656
E+ K HEE+++ T+ N +AK E + G E
Sbjct: 186 EEMLKEHEEEVANTELLNENGAAKTTENGTSSGKE 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 564 YKSHEEQISKTKAANRESAKNAERAQARG 650
YK HEE+ +T+ NRE A+ RA RG
Sbjct: 115 YKKHEEEDEETRRQNRE-ARGVCRAFQRG 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,728
Number of Sequences: 28952
Number of extensions: 249981
Number of successful extensions: 822
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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