Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0173
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   3.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.0  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 406 FSYRHNIVSSLLCTSSTYIV--LQF 338
           F    N+  SLL T  TY+V  LQF
Sbjct: 390 FDVNRNLFKSLLATMVTYLVVLLQF 414


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 21/88 (23%), Positives = 32/88 (36%)
 Frame = -1

Query: 378 HCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIE 199
           HC  +L  +      NN  T   H+    +   FT +    +         L P++    
Sbjct: 159 HCFSMLNYVYSSKCENNS-TGVEHFFKKQFHYIFTYMPYNIVFGLCLTTFGLLPVNGVTS 217

Query: 198 ELCFLTFQYSDLSDAYYKLITFLLRFLT 115
           E C LTF +      Y K+I     F+T
Sbjct: 218 EKCNLTFSWYSKKVFYSKIIISGSIFMT 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,388
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)