Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0173
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    32   0.36 
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    29   3.4  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 235 LFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRR 387
           L  ++LH + S  S   DPQ    +    EF+ +++EA+ K+ +Y A  RR
Sbjct: 188 LVNEKLHNLHSVASRCNDPQLTDFV--ESEFLEEQVEAIKKISEYVAQLRR 236


>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 345 FNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEELCF 187
           FN  N K+  ++ Y YF+ +S   +   Y +  +S  +    PI++ + +L F
Sbjct: 116 FNILNKKIFDYFPYPYFVSVSHLLVGVLYCLVGWSFGLPKRAPINSTVLKLLF 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,705
Number of Sequences: 37544
Number of extensions: 211273
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)