Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0173
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          33   0.16 
SB_924| Best HMM Match : SNF (HMM E-Value=0.14)                        29   4.5  
SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 11/52 (21%), Positives = 30/52 (57%)
 Frame = -1

Query: 414 IMCLVIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKY 259
           I+C+ +V+++      L+ L+    ++++ L   + + +++W  F ++ AKY
Sbjct: 432 IICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKY 483


>SB_924| Best HMM Match : SNF (HMM E-Value=0.14)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = -1

Query: 414 IMCLVIVIISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQ 235
           I  +V++++ +    VLL L+  F      L   +  +  + ++ FT++ K  +  F+  
Sbjct: 196 IFTMVLLVLVTTFTMVLLVLVTIFTMVLLVLVTTFTMVLLVLVTIFTMVNKVLVTIFTMV 255

Query: 234 VETLRPISTQIEELCFLTF 178
            E L  I T + E+    F
Sbjct: 256 NEVLVTIFTMVNEVLVTIF 274


>SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 199 GAMFSDVSIQRFVRRVLQINNFSFTFSDSVNQ*FPCVE*KR*IDTYVHRYL*LFLFSNH 23
           G +F  ++I   +RR LQ +   F+ + +VN  F CV     I   + RY+ LF    H
Sbjct: 80  GFLFLPLAIGYLMRRELQDSCVYFSLTLTVNWLFRCVSYLTLIAVCIERYVSLFWTYKH 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,884
Number of Sequences: 59808
Number of extensions: 268601
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)