Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0173
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100276-1|AAI00277.1|   88|Homo sapiens LYR motif containing 5 ...    97   4e-20
BC071769-1|AAH71769.1|   88|Homo sapiens LYR motif containing 5 ...    97   4e-20
CR541997-1|CAG46794.1|  128|Homo sapiens NDUFA6 protein.               31   2.8  
CR456714-1|CAG32995.1|  128|Homo sapiens NDUFA6 protein.               31   2.8  
CR456529-1|CAG30415.1|  154|Homo sapiens NDUFA6 protein.               31   2.8  
BC002772-1|AAH02772.1|  128|Homo sapiens NDUFA6 protein protein.       31   2.8  
AL021878-2|CAI19953.1|  154|Homo sapiens NADH dehydrogenase (ubi...    31   2.8  
AF047182-1|AAC04267.1|  128|Homo sapiens NADH-ubiquinone oxidore...    31   2.8  

>BC100276-1|AAI00277.1|   88|Homo sapiens LYR motif containing 5
           protein.
          Length = 88

 Score = 97.5 bits (232), Expect = 4e-20
 Identities = 45/76 (59%), Positives = 59/76 (77%)
 Frame = +1

Query: 172 VLKRQKT*LLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEAL 351
           VLK  K  LLYLGRD+P+G D F+KRL  +F KN +  +P+KI+ ++  GEFV+KE+EAL
Sbjct: 9   VLKLYKN-LLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEAL 67

Query: 352 YKLKKYRAMKRRYYDD 399
           Y L+KYRAMK+RYY D
Sbjct: 68  YFLRKYRAMKQRYYSD 83


>BC071769-1|AAH71769.1|   88|Homo sapiens LYR motif containing 5
           protein.
          Length = 88

 Score = 97.5 bits (232), Expect = 4e-20
 Identities = 45/76 (59%), Positives = 59/76 (77%)
 Frame = +1

Query: 172 VLKRQKT*LLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEAL 351
           VLK  K  LLYLGRD+P+G D F+KRL  +F KN +  +P+KI+ ++  GEFV+KE+EAL
Sbjct: 9   VLKLYKN-LLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEAL 67

Query: 352 YKLKKYRAMKRRYYDD 399
           Y L+KYRAMK+RYY D
Sbjct: 68  YFLRKYRAMKQRYYSD 83


>CR541997-1|CAG46794.1|  128|Homo sapiens NDUFA6 protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 60  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 109


>CR456714-1|CAG32995.1|  128|Homo sapiens NDUFA6 protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 60  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 109


>CR456529-1|CAG30415.1|  154|Homo sapiens NDUFA6 protein.
          Length = 154

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 86  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 135


>BC002772-1|AAH02772.1|  128|Homo sapiens NDUFA6 protein protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 60  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 109


>AL021878-2|CAI19953.1|  154|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 6, 14kDa protein.
          Length = 154

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 86  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 135


>AF047182-1|AAC04267.1|  128|Homo sapiens NADH-ubiquinone
           oxidoreductase subunit CI-B14 protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 241 RKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRRYYDD 399
           R ++ ++F KN+  TDP+ + ++V  G+    E+E   K+ K R    R++ +
Sbjct: 60  RDKVREMFMKNAHVTDPRVVDLLVIKGKI---ELEETIKVWKQRTHVMRFFHE 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,161,774
Number of Sequences: 237096
Number of extensions: 1284412
Number of successful extensions: 6453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6453
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)