Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0172
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    79   2e-15
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    79   3e-15
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    77   9e-15
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    59   2e-09
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.004
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    28   5.3  
08_02_0616 - 19357401-19357522,19357600-19357705                       27   9.3  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 22  VKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 201
           +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62

Query: 202 KG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 321
           K    E                IVGASL  I  KR  KPEV
Sbjct: 63  KDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = +1

Query: 4    WIPGLQVKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVL 183
            W+ G +    LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +
Sbjct: 1011 WLEGTE----LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAM 1066

Query: 184  YRRKFKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 321
            YR++ KK    E                IVGA+L  I  KR+ KPEV
Sbjct: 1067 YRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 42/103 (40%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = +1

Query: 16  LQVKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRK 195
           L+V   LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++
Sbjct: 27  LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQ 86

Query: 196 FKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 321
            KK    E                IVGA+L  I  KR  KPEV
Sbjct: 87  HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/56 (44%), Positives = 32/56 (57%)
 Frame = +1

Query: 22  VKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 189
           +++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 106 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 189
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 62  IQAMARPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLE 241
           +  M  PW  W +KPS   I ++ P    G  L++   +  T  S   A  ++    + E
Sbjct: 154 LSKMIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPE 209

Query: 242 GPKSS 256
           GP+S+
Sbjct: 210 GPESA 214


>08_02_0616 - 19357401-19357522,19357600-19357705
          Length = 75

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 2   SGSPGCR*RSDFAPIVDTKYIQAMA 76
           SGSP CR  S+    VD+ Y++A A
Sbjct: 29  SGSPSCRLDSEPVVTVDSAYVEAAA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,272,962
Number of Sequences: 37544
Number of extensions: 213607
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)