Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0171
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   3.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   5.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   7.2  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    24   7.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    24   7.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   9.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    24   9.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   9.5  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 279 RNISSPPFSGFTNP*PFSLQN--VLILPVSNGL 187
           ++++SPP +GF  P P S +   +L+ P S  L
Sbjct: 116 QSLNSPPLAGFVKPDPTSAEPGFLLLWPASGDL 148


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 360 LGGIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSGFTNP*P 232
           LG + +SR  +   GR   SPS S +    + PP  G   P P
Sbjct: 341 LGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 337 IYNFITRQGYIFTFDIRYMEKYIFAPFFRFHKSVTFLSAE 218
           I +F   Q Y+FT+      K I     RF + + F++++
Sbjct: 803 IKSFEKLQSYVFTYYCERYPKLILKRVLRFLEEIGFITSQ 842


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 86  SDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEK 259
           ++D P     +L   S I+T+    A     A G   + G I    R+KG  F +PEK
Sbjct: 190 NEDVPIGDRINLAYSSSIVTKGR--AKGICYATGMQTQIGAIAAGLRQKGKLFQRPEK 245


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 289 RYMEKYIFAPFFRFHKSVTFLSAERLDFTS 200
           R+M    F+PF+R H ++  +S E   ++S
Sbjct: 691 RWMAMGAFSPFYRNHNNIYQISQEPYTWSS 720


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 183 KALSDVDAVRFRRVIIGLGNCKCEFVLLGESSLL 82
           +A SDV A    R I+ LGNC+   V+  E ++L
Sbjct: 175 EAHSDVTARFNERFILSLGNCENCLVIDDELNVL 208


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 309 YPCLVMKLYIDFAQSHLSSK--NFKL 380
           +PC ++  YID   S +S K  NFKL
Sbjct: 536 FPCSILPSYIDLFISLMSFKNLNFKL 561


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 77  GFNSDDSPNKTNSHLQLPSPIITRRN 154
           GF+ D SP  T      P+P+IT R+
Sbjct: 723 GFSFDKSPVTTPPLPTAPAPVITSRH 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,645
Number of Sequences: 5004
Number of extensions: 33891
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)