Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0171
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 41 4e-04
02_01_0158 - 1103461-1104186 39 0.002
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 0.99
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 29 1.7
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 3.0
05_07_0361 + 29555446-29556138 27 4.0
07_03_0250 - 15822602-15822650,15822744-15822814,15822908-158230... 27 7.0
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 7.0
04_03_0326 + 14403825-14403937,14404030-14404261 27 7.0
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 27 7.0
10_08_0535 + 18613223-18613717,18615858-18616373 26 9.2
06_01_0710 - 5149456-5149570,5149591-5149709 26 9.2
>08_01_0202 - 1638978-1639571
Length = 197
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 334
G +K F KG GF+ P+ GGED+F+H S ++ + Y L +V+
Sbjct: 8 GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52
>02_01_0158 - 1103461-1104186
Length = 241
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 203 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 304
G +K F KG GF+ P+ G ED+F+H S I+ +
Sbjct: 9 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 42
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 29.5 bits (63), Expect = 0.99
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 379 SLKFFELRWDWAKSIYNFI-TRQGYIFTFDIRYMEKYIFAPFFRFHKSVTFLSAERLDFT 203
+LK+F+ W IY++ T+ F+F + +++F P +V L+ + +DF
Sbjct: 187 ALKWFDFTWQPIDEIYSYFGTKIAIYFSF-LGMYTRWLFFP------AVFGLATQLIDFG 239
Query: 202 SFQWI 188
S QW+
Sbjct: 240 SLQWL 244
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 290 DIEGEYVPLPGDEV--IYRLCPIPPKFEKFQAVH 385
D EG+ PLPG E+ I+R+ P PP +K+Q H
Sbjct: 338 DQEGD--PLPGTELKEIWRVAPTPPN-DKYQYTH 368
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 122 QLPSPIITRRNRTASTSERALGNPLETGKI 211
Q+ P +T R R+A++S G P+E+G I
Sbjct: 487 QVSGPPVTNRERSATSSADEHGRPVESGGI 516
>05_07_0361 + 29555446-29556138
Length = 230
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = -1
Query: 339 RYITSSPGRGTY-----SPSISDIWRNISSPPFSGFT 244
R + S+PGR T +P I+ IWR I PF T
Sbjct: 159 RQVLSAPGRPTVVSSSNAPRIAPIWRPIDKSPFGNPT 195
>07_03_0250 -
15822602-15822650,15822744-15822814,15822908-15823006,
15823235-15823309,15823808-15823885,15823990-15824098,
15824167-15824216,15824310-15824411,15824994-15825071,
15825419-15825685,15825863-15825962,15826137-15826315
Length = 418
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 230 KGHGFVKPEKGGEDIFLHISDIEGEYVP 313
KG G K G D+F+ I I+ Y P
Sbjct: 180 KGLGMNNFSKSGRDLFIEIQKIDSNYYP 207
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 348 GQSRYITSSPGRGTYSPSISDIWRNISSPPFSGFTNP 238
G+S ++T + TY+P + I + P S FTNP
Sbjct: 750 GRSSHLTRAEALLTYAPEYAAIEISTGETPTSLFTNP 786
>04_03_0326 + 14403825-14403937,14404030-14404261
Length = 114
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 360 LGGIGQSRYITSSPGRGTYSPSISDIWRNISSPPF 256
L G RY+ SP P I ++WR + PPF
Sbjct: 27 LSGHFYRRYL-KSPRSEQRWPGIKEVWRQLPYPPF 60
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 293 YQIYGEIYLRPLFQVS 246
Y+ YG++YL PLF +S
Sbjct: 369 YESYGKLYLSPLFAIS 384
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 376 LKFFELRWDWAKSIYNFITRQGYI--FTFDIRYMEKYIFAPFF 254
L F+EL WD + I ++T ++ +TF +R ++ F FF
Sbjct: 231 LTFWELSWDVMEPICFYVTSMYFMAGYTFFLRTKKEPSFEGFF 273
>06_01_0710 - 5149456-5149570,5149591-5149709
Length = 77
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 95 SPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDI 274
+PN N P ++ R STSE + PL + GHGF E+ G +
Sbjct: 6 TPNTINIEATTYKPTYSKTRRRISTSEIGMAIPLRRDE-NAISDLAGHGF---EEEGYPV 61
Query: 275 FLHISDIE 298
+ SD++
Sbjct: 62 VDYESDLQ 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,442,805
Number of Sequences: 37544
Number of extensions: 207740
Number of successful extensions: 562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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