Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0171
(390 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38) 37 0.007
SB_18175| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.027
SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 29 1.4
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_18413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_5268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_43564| Best HMM Match : zf-C2H2 (HMM E-Value=1.2) 27 7.2
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 26 9.5
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 26 9.5
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) 26 9.5
>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
Length = 80
Score = 36.7 bits (81), Expect = 0.007
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 197 ETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 304
+ G +K F EKG+GF+ P+ G+D+F+H I+ +
Sbjct: 16 QNGTVKWFNDEKGYGFITPQ-SGDDLFVHFKAIQSD 50
>SB_18175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 34.7 bits (76), Expect = 0.027
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 290 DIEGEYVPLPGDEVIYRLCPIPPKFEKFQAVHV 388
DIE E+V GD V +R IPPK + QAV V
Sbjct: 20 DIESEFVLKEGDRVTFRTIAIPPKEQAKQAVEV 52
>SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 95 SPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDI 274
S + TN + PS +T + S +P G+ + C + G PE+GGE
Sbjct: 32 SSDVTNENHGSPSDDVTATSTYQSLDRTIRTSPDGRGRARGPCEYEAVGSSGPERGGEGQ 91
Query: 275 FLHISDIEGEYVPL 316
+ ++ +Y PL
Sbjct: 92 YAELTSTCPDYQPL 105
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 29.9 bits (64), Expect = 0.77
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 330 TSSPGRGTYSPSISDIWRNISSPPFSGFTNP*PFSLQNVLILPVS 196
TSS G TY SI+ + S P GF+ P S N+ PVS
Sbjct: 2358 TSSGGMNTYQSSINMVPVRPSPPHVDGFSQSPPMSTLNMSNRPVS 2402
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 95 SPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHG 241
SPN T+S SPI+T A T G P + K FC G G
Sbjct: 417 SPNNTSSSAPDKSPILTDMKDFAQTFPTE-GTPKYSNKDGMFCERNGDG 464
>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 83 NSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKG 262
N SP+K S LP P++ R +E + PL T ++++ + V +K
Sbjct: 412 NLQFSPSKPGSRPMLPRPLV--RRPLQGQTEGSCTAPLTTNQLESLVAQ---CCVSEKKP 466
Query: 263 GEDIFLHISDIEGEYVP 313
G I + +S E P
Sbjct: 467 GSGIIMTVSSAESNSTP 483
>SB_18413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 270 IYFSIYLISKVNMYPCLVMKLYIDFAQSHLSSK 368
IY ++YL S+V+ PC+ +Y+ SH+S+K
Sbjct: 131 IYQAMYLPSRVSTEPCIYQAVYL---PSHVSTK 160
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 270 IYFSIYLISKVNMYPCLVMKLYI 338
IY ++YL S+V+ PC+ +Y+
Sbjct: 115 IYRAVYLPSRVSTKPCIYQAMYL 137
>SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 71 DYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKI 211
D GF DD N ++ L LPS + ++ R +T L E K+
Sbjct: 278 DNGFTDDDKKNLRDAGLPLPSVVWDKQMRDDTTIREMLDKSGEINKM 324
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 89 DDSPNKTNSHLQLPSP-IITRRNRT-ASTSERALGNPLETGKIK 214
DDS +K N H +P P +I +N+T T+ P++ GK K
Sbjct: 1053 DDSSSKENIHDDIPKPEVIVIQNKTFDDTNITTKPAPVKEGKTK 1096
>SB_5268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 131 SPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYV 310
SP+ RR +ST E + G + GF++P+ + ++D G Y
Sbjct: 52 SPLSQRRVSGSSTIETSEGCHFRQETFSVWVSSMASGFLQPQA------IRVTDYTGVYT 105
Query: 311 PLP 319
P+P
Sbjct: 106 PMP 108
>SB_43564| Best HMM Match : zf-C2H2 (HMM E-Value=1.2)
Length = 474
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 354 GIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSG 250
G Q +ITS+PG G + P I R PP SG
Sbjct: 238 GERQFEWITSAPGFGDFVPVIK---RQAKKPPSSG 269
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 236 HGFVKPEKGGEDIFLH----ISDIEGEYVPLP 319
H V E+ E FLH + DIE Y PLP
Sbjct: 328 HDLVTSEQDRESKFLHEFDELPDIENAYTPLP 359
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 80 FNSDDSPNKTNSHLQLPSPIITRRNRTASTSER 178
F+SDD + N P+ITR R +T+ R
Sbjct: 1802 FDSDDDDDDDNDDNNGKEPVITRLKRKMTTTRR 1834
>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
Length = 416
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 314 GVHIHLRYQIYGEIYLRPLFQVSQIRD 234
G+H L Q+Y E Y+ PL +++ R+
Sbjct: 293 GIHDSLNAQLYQESYIEPLLKLTTGRE 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,316
Number of Sequences: 59808
Number of extensions: 253556
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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