Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0171
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.054
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.054
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.054
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 2.0
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 2.0
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 2.0
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 28 2.7
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 28 2.7
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 27 3.6
U28991-10|AAK68306.2| 487|Caenorhabditis elegans Hypothetical p... 27 3.6
U28991-9|AAU05576.1| 484|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF025471-7|AAB71066.3| 161|Caenorhabditis elegans Hypothetical ... 27 6.2
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ... 27 6.2
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 26 8.2
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 26 8.2
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 26 8.2
U64847-10|AAB04877.2| 404|Caenorhabditis elegans Hypothetical p... 26 8.2
U64847-9|AAQ23119.1| 426|Caenorhabditis elegans Hypothetical pr... 26 8.2
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p... 26 8.2
AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical... 26 8.2
AF016452-12|AAB66011.1| 309|Caenorhabditis elegans Hypothetical... 26 8.2
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 26 8.2
AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical ... 26 8.2
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.054
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 140 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 295
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.054
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 140 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 295
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.054
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 140 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 295
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.17
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 191 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 295
P G K F KG+GFV + GED+F+H S++
Sbjct: 20 PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 54
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 1851 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1886
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 2142 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2177
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 2157 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2192
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 1961 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1996
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 1851 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1886
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 2142 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2177
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 2157 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2192
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 92 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 199
DS TN L LP+ I R + TASTS PL+
Sbjct: 1961 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1996
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 203 GKIKTFCREKGHGFVKPEKGGEDIFLH 283
G +K F + G+GF+ EDIF+H
Sbjct: 23 GTVKWFNVKNGYGFINRTDTNEDIFVH 49
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 122 QLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLH 283
+LP+ R S+ A+ L+ GK+K + + +GF+ G +DIF+H
Sbjct: 42 RLPTAERIRLWEEEQKSKTAITTGLQ-GKVKWYSVLRRYGFISRNDGEKDIFVH 94
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 68 NDYGFNSDDSPNK--TNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHG 241
+D SP+K T+ H +LP+ R ++ L L+ GK+K + + +G
Sbjct: 21 DDLSIGKKRSPSKDDTSKH-RLPAAERIRIWEEEQKAKIVLTAGLQ-GKVKWYSVLRRYG 78
Query: 242 FVKPEKGGEDIFLH 283
F+ G +D+F+H
Sbjct: 79 FISRSDGEKDVFVH 92
>U28991-10|AAK68306.2| 487|Caenorhabditis elegans Hypothetical
protein F08F8.10a protein.
Length = 487
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 354 GIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSGFTNP 238
GI +S TYSP + ++ISS P +GFTNP
Sbjct: 229 GIPPPTTYSSHQQSSTYSPIV----QSISSQPTAGFTNP 263
>U28991-9|AAU05576.1| 484|Caenorhabditis elegans Hypothetical
protein F08F8.10b protein.
Length = 484
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 354 GIGQSRYITSSPGRGTYSPSISDIWRNISSPPFSGFTNP 238
GI +S TYSP + ++ISS P +GFTNP
Sbjct: 226 GIPPPTTYSSHQQSSTYSPIV----QSISSQPTAGFTNP 260
>AF025471-7|AAB71066.3| 161|Caenorhabditis elegans Hypothetical
protein R52.9 protein.
Length = 161
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 194 LETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYV 310
L G K F R H F KPE G D F+ ++ +YV
Sbjct: 92 LVAGNGKCFRRTVQHKFQKPEGHGMDKFISWENLLKDYV 130
>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
protein Y54F10BM.9 protein.
Length = 1142
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 292 IRYMEKYIFAPFFRFHKSVTFLSAERLD 209
+RY +KYIF FR V ++S++ +D
Sbjct: 1047 LRYFKKYIFLKEFRNEIYVVYVSSQAVD 1074
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 300 PSISDIWRNISSPPFSGFTNP*PFSLQNVLILPVSN 193
P+I D+ NI + + P P+ +QN + LPV N
Sbjct: 25 PTIQDMLNNIGASTVN-LMQPNPYLMQNQIPLPVPN 59
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 300 PSISDIWRNISSPPFSGFTNP*PFSLQNVLILPVSN 193
P+I D+ NI + + P P+ +QN + LPV N
Sbjct: 25 PTIQDMLNNIGASTVN-LMQPNPYLMQNQIPLPVPN 59
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 355 WDWAKSIYNFITRQGYIFTFD-IRYMEKYIFAPFFRFHKSVTFLSAERLDFTSFQWIT*S 179
W ++ IYN T+ G+I I Y + + + V FL L +SF W+ S
Sbjct: 43 WGYSVEIYNTTTKDGFILELHRIPYGREVPTSSDVNNSRPVIFLQHGFL-CSSFDWVANS 101
Query: 178 P 176
P
Sbjct: 102 P 102
>U64847-10|AAB04877.2| 404|Caenorhabditis elegans Hypothetical
protein F08F3.9a protein.
Length = 404
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 150 EIEQRRHQKGL*VIHWKLVKSRRSAERKVTDL*NLKKGAKIYFSIYLISK 299
EI+++ + GL KL +SRR VT L ++K G K S+ ISK
Sbjct: 268 EIKEKAYGSGL-----KLTRSRRHCTTSVTKLPSVKFGFKSIDSVDEISK 312
>U64847-9|AAQ23119.1| 426|Caenorhabditis elegans Hypothetical
protein F08F3.9b protein.
Length = 426
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 150 EIEQRRHQKGL*VIHWKLVKSRRSAERKVTDL*NLKKGAKIYFSIYLISK 299
EI+++ + GL KL +SRR VT L ++K G K S+ ISK
Sbjct: 268 EIKEKAYGSGL-----KLTRSRRHCTTSVTKLPSVKFGFKSIDSVDEISK 312
>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
protein F18A1.1 protein.
Length = 1075
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 367 FELRWDWAKSIYNFITRQGYI 305
F + WD SI NFITR G I
Sbjct: 72 FTVNWDNIWSIRNFITRSGKI 92
>AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical
protein C16C4.13 protein.
Length = 495
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 212 KTFCREKGHGFVKPEKGGEDIFLHISDIEGEYV 310
K F R H F KPE G D F+ +++ +YV
Sbjct: 80 KFFQRTVQHEFQKPEGHGMDKFISWENMQRDYV 112
>AF016452-12|AAB66011.1| 309|Caenorhabditis elegans Hypothetical
protein T05H4.5 protein.
Length = 309
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 353 GLGKVDI*LHHQAGVHIHLRYQIYGEIYLRPLFQVSQIRDL 231
GL D L G H++L I G+I +RP VS DL
Sbjct: 71 GLPSKDHILGLPIGQHVYLTANIDGKIIVRPYTPVSSDEDL 111
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 300 PSISDIWRNISSPPFSGFTNP*PFSLQNVLILPVSN 193
P+I D+ NI + + P P+ +QN + LPV N
Sbjct: 25 PTIQDMLNNIGASTVN-LMQPNPYLMQNQIPLPVPN 59
>AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical
protein Y82E9BR.12 protein.
Length = 438
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 315 CLVMKLYIDFAQSHLSSKNFKLSMC 389
C+ +++ DF++ HL +N +++MC
Sbjct: 235 CVNVRIRSDFSEPHLQKENEEVAMC 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,352
Number of Sequences: 27780
Number of extensions: 186325
Number of successful extensions: 643
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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