Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0171
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.2  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   5.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   5.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   5.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   5.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 176 FLMSTLFDFAE 144
           FLM ++FDFAE
Sbjct: 315 FLMDSMFDFAE 325


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 340 SIYNFITRQGYIFTFDIRYMEKYIFAPFFRF 248
           S+Y+   R+    T D  + +KY   P+F F
Sbjct: 196 SVYSKTRRRALEHTLDRFHNDKYSNVPYFLF 226


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 116 VPGSRHIGPLTPFPPRF 132


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  GFNSDDSPNKTNSHLQLPSPIITRRN 154
           G N   + N   SHL LP+P I  ++
Sbjct: 32  GMNQCQAVNGHCSHLCLPAPRINSKS 57


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  GFNSDDSPNKTNSHLQLPSPIITRRN 154
           G N   + N   SHL LP+P I  ++
Sbjct: 32  GMNQCQAVNGHCSHLCLPAPRINSKS 57


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 364 VPGSRHIGPLTPFPPRF 380


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 349 VPGSRHIGPLTPFPPRF 365


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 314 LPGDEVIYRLCPIPPKF 364
           +PG   I  L P PP+F
Sbjct: 365 VPGSRHIGPLTPFPPRF 381


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -1

Query: 306  YSPSISDIWRNI 271
            Y P ++D+WR++
Sbjct: 1151 YEPILADMWRSV 1162


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -1

Query: 306  YSPSISDIWRNI 271
            Y P ++D+WR++
Sbjct: 1147 YEPILADMWRSV 1158


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 210 ILPVSNGLPKALSDVDAVRFRRVIIGLGNC 121
           + P+     +  +DV      R   GLGNC
Sbjct: 133 VYPLDFARTRLAADVGKAGGEREFTGLGNC 162


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 210 ILPVSNGLPKALSDVDAVRFRRVIIGLGNC 121
           + P+     +  +DV      R   GLGNC
Sbjct: 133 VYPLDFARTRLAADVGKAGGEREFTGLGNC 162


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 236 HGFVKPEKGGEDIFLHISDIEG 301
           HG V  E GGE   + IS ++G
Sbjct: 272 HGIVIEELGGEIQCVKISALKG 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,667
Number of Sequences: 438
Number of extensions: 2389
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)