Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0171
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 44 5e-05
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 42 1e-04
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 40 6e-04
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 38 0.002
At3g03140.1 68416.m00310 expressed protein 33 0.090
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 29 1.1
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 28 2.6
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 28 2.6
At2g15960.1 68415.m01827 expressed protein 28 2.6
At1g13560.2 68414.m01589 aminoalcoholphosphotransferase (AAPT1) ... 27 3.4
At1g13560.1 68414.m01590 aminoalcoholphosphotransferase (AAPT1) ... 27 3.4
At4g15920.1 68417.m02418 nodulin MtN3 family protein similar to ... 27 4.5
At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibit... 27 4.5
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 27 5.9
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 26 7.8
At1g17480.1 68414.m02145 calmodulin-binding family protein low s... 26 7.8
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 43.6 bits (98), Expect = 5e-05
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 185 GNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 334
G G +K F +KG GF+ P+ GG+D+F+H S I E + L +E +
Sbjct: 7 GGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAV 57
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 185 GNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 304
G G +K F +KG GF+ P GG+D+F+H S I E
Sbjct: 11 GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSE 50
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 39.9 bits (89), Expect = 6e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 203 GKIKTFCREKGHGFVKPEKGGEDIFLHISDI 295
GK+ F KG+GF+ P+ GGE++F+H S I
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSI 43
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 200 TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 304
TGK+ F KG+GF+ P+ G ++F+H S I E
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSE 46
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 32.7 bits (71), Expect = 0.090
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 80 FNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKT-----FCREKGHGF 244
F++DD+ + NS L++P P R+ + ++ L N T KT F E+GH
Sbjct: 652 FSNDDNSVRRNSSLRIPRPPAERKQQHQQQQKKLLKNTNATASQKTRALSSFSGEQGHNG 711
Query: 245 VKPEK 259
+K +
Sbjct: 712 MKASR 716
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 62 CPNDYGFNSDDSPNKTNSHLQLPSP---IITRRNRTASTSERALGNPLETGKIK 214
C N + FN SP K N + S + R RT S S R LG +E G+ +
Sbjct: 8 CSNRFRFNGGYSPEKFNRKVSSRSSELNVCVSRIRTQSFSCRRLGGFMEIGETR 61
>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
(EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
Length = 365
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 110 NSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKG 235
N+ LQ +P++ + S S +G+ ET ++ FC+EKG
Sbjct: 279 NTPLQFVTPLVILGRKVISGS--FIGSIKETEEVLAFCKEKG 318
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 312 GTYSPSISDIWRNISSPPFSGFTNP*PFSLQNVLILPVSNGLPKALSDVDAVRFRRV--I 139
G +P+ + +++P SG PF+ N LPVSNG+P ++ V V +
Sbjct: 227 GGSNPTARAVTGVVANPALSGQL---PFAKPNGANLPVSNGVPSNNNNNGIVNNNNVPFL 283
Query: 138 IGLG 127
+GLG
Sbjct: 284 VGLG 287
>At2g15960.1 68415.m01827 expressed protein
Length = 77
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 104 KTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPE 256
K + + +P++ R+N T+ S++ G+ E G I REK E
Sbjct: 14 KMSEKINTRNPLMQRKNSTSVVSKQQQGSEEERGLINQKIREKNEAVTMSE 64
>At1g13560.2 68414.m01589 aminoalcoholphosphotransferase (AAPT1)
identical to aminoalcoholphosphotransferase GI:3661593
from [Arabidopsis thaliana]
Length = 346
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 273 ISSPPFSGFTNP*PFSLQNVLILPVSNGLPKALSDVDAVRFRRVIIG 133
IS+ PF G T F+ N LILPV NG + L+ + F I+G
Sbjct: 104 ISAIPFYGATWEHYFT--NTLILPVINGPTEGLALIFVSHFFTAIVG 148
>At1g13560.1 68414.m01590 aminoalcoholphosphotransferase (AAPT1)
identical to aminoalcoholphosphotransferase GI:3661593
from [Arabidopsis thaliana]
Length = 389
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 273 ISSPPFSGFTNP*PFSLQNVLILPVSNGLPKALSDVDAVRFRRVIIG 133
IS+ PF G T F+ N LILPV NG + L+ + F I+G
Sbjct: 147 ISAIPFYGATWEHYFT--NTLILPVINGPTEGLALIFVSHFFTAIVG 191
>At4g15920.1 68417.m02418 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 241
Score = 27.1 bits (57), Expect = 4.5
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Frame = +3
Query: 195 WKLVKSRRSAERKVTDL*NLKKGAKI--YFSI-----YLISKVNMYPCLVMKLYID---- 341
WK+VK R + E K G+ + Y+ I YL+S VN + LV +Y+
Sbjct: 28 WKIVKRRSTEEYKSLPYICTLLGSSLWTYYGIVTPGEYLVSTVNGFGALVETIYVSLFLF 87
Query: 342 FAQSHLSSK 368
+A HL K
Sbjct: 88 YAPRHLKLK 96
>At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibitor
family protein contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 186
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 299 LRYQIYGEIYLRPLFQVSQIRDLSLCRTS*FYQFPMDYLKPFLMSTLFDFA 147
L+Y + +Q + ++S+CRTS F+ PM Y + M L D A
Sbjct: 117 LKYLYLRDYRFMRAYQALALVNISMCRTSFFHPTPMVYAN-WNMKMLTDIA 166
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 80 FNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFC 223
F+S S ++ N H ++ P+I R RT + + + + +FC
Sbjct: 65 FSSPSSSSEINGHAEIRKPLIGIRGRTPTRTTAWFKTTVAVTVLLSFC 112
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 83 NSDDSPNKTNSHLQLPSPIITRRNRTASTS 172
+S S N +S + +P PI+TRRN ST+
Sbjct: 3 SSSSSSNMASSSILIP-PILTRRNLLLSTT 31
>At1g17480.1 68414.m02145 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 371
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 101 NKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEK 259
++ +H + PS + ++ T + G+P ++KT + K G +K E+
Sbjct: 150 SRVRAHRRAPSDSLELKDPVKQTEKGWCGSPRSIKEVKTKLQMKQEGAIKRER 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,610,614
Number of Sequences: 28952
Number of extensions: 175604
Number of successful extensions: 561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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