Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0170
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 33 0.031
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 31 0.13
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.2
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.6
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 3.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 4.7
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.7
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 26 6.2
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 25 8.2
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 33.5 bits (73), Expect = 0.031
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 599 VFNFINRTLGDKEQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLN 429
V NFI RTL + +T N D + V LN+ + KI +++ I +I N
Sbjct: 215 VINFIRRTLSIQSETHVKNIDSLQQIVPTIPHLPLNLVQLKITPEISAIRTILINKN 271
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 31.5 bits (68), Expect = 0.13
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +1
Query: 283 FSFSFLCLCSLMISRSRCFKACSSLXFSLICRLIFV*PLVP*GYLTNELFNFIISRSILF 462
FSF FL SL S AC + F + + PL P GY +L +FI LF
Sbjct: 334 FSFDFLQKASLHSSTLPIHLACKKIPFYDVTSHHYTTPLNPNGY---KLESFIFD---LF 387
Query: 463 TSSSILNFSIFK 498
S S+ NF F+
Sbjct: 388 PSVSVENFGCFQ 399
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 437 KLNNSLVKYPQGTSGHTNINLQI---REKXKELQALKQRERDIIKEQRHRKEK 288
+L NS + T TN N + +++ KEL+++ Q +DII Q R K
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSINQNLQDIISRQDQRASK 735
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 599 VFNFINRTLGDKEQTETNNCD-PTEVDVKQSTSKDLNIEKFKIDEDVNRIE 450
V +IN GD E +C P +D+ +D + EKFK +NRI+
Sbjct: 735 VTEYINAA-GDGENVNCPSCFIPLSIDLSAPALEDFSEEKFKNASILNRID 784
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 448 RSILFTSSSILNFSIFKSLLVDCLTSTSVGSQLLV 552
+S++ TSSSILN+S+ K L TS+ + LL+
Sbjct: 300 QSVVQTSSSILNYSMKKLLYNASFAITSLFNALLI 334
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 368 REKXKELQALKQRERDIIKEQRHRKEKEKM 279
R+K +E Q K+RE+ +K+Q+ ++EKM
Sbjct: 659 RQKREEKQKQKEREKK-LKKQQQEADREKM 687
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = -3
Query: 687 AAKIEKVTKERRRKKQKSLRTREREREKK 601
A +E++ +E +RK+++ L+ + RE+EKK
Sbjct: 570 AKLLEEIEEENKRKQERELK-KIREKEKK 597
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 368 REKXKELQALKQRERDIIKEQRHRKEK 288
REK Q L++ E I E+R R+EK
Sbjct: 684 REKMAREQRLREEEEKRILEERKRREK 710
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/108 (18%), Positives = 46/108 (42%)
Frame = -1
Query: 593 NFINRTLGDKEQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVK 414
N + L ++ TE+ + ++Q +EK +I+ + R++ E + L++
Sbjct: 84 NVEEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELME 143
Query: 413 YPQGTSGHTNINLQIREKXKELQALKQRERDIIKEQRHRKEKEKMTIF 270
+ + + + K E + LKQ + D +++ +EK F
Sbjct: 144 KEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETF 191
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -1
Query: 473 DEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQIREKXKELQALKQRERD-----IIKE 309
DE++ R++ +II L N+ + + K KEL+ K +E D I++E
Sbjct: 953 DEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNKELEK-KLKEADEYWLLIVEE 1011
Query: 308 QRHRKEKEK 282
++ K+K
Sbjct: 1012 LESKRTKDK 1020
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = -1
Query: 512 STSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQIREKXKELQALKQ 333
S+ + L+ + ++E++ RI I +L N+ ++ G QIR K KEL+ L +
Sbjct: 295 SSDRTLDSQLQTVNENITRISTSI-ELKNTALEEEHGDLQ------QIRGKAKELETLLR 347
Query: 332 RERDIIKEQRHRKEKEK 282
+R + E EK K
Sbjct: 348 GKRKRLDEVLSVYEKRK 364
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 374 QIREKXKELQALKQRERDIIKEQRHRKEKEK 282
QIREK +E+ + R+R + +E+ R++ E+
Sbjct: 32 QIREKAREITEERNRQRKLQRERELRQKYEE 62
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 6.2
Identities = 23/95 (24%), Positives = 48/95 (50%)
Frame = -1
Query: 599 VFNFINRTLGDKEQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSL 420
+ + +++ + D+ + E +P E ++ +S+ KD+ E K++E+ +R+E+ N +
Sbjct: 7 IIDSVSQKIRDRRKLEEFGQNPDE-EI-ESSLKDVRQELQKLNEEQSRLEK-----NAQI 59
Query: 419 VKYPQGTSGHTNINLQIREKXKELQALKQRERDII 315
+Y S I +Q R + E + KQR I
Sbjct: 60 PEYRVRESEAFLIRMQRRLESAEEEFEKQRRASSI 94
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 569 DKEQTETNNCDPTEVDVKQ 513
+ E TNNC P++ DVK+
Sbjct: 21 EHEYVHTNNCKPSKEDVKK 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,046
Number of Sequences: 5004
Number of extensions: 37243
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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