Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0170
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 663 KERRRKKQKSLRTREREREKK 601
           +ER +++ +  R RER +E+K
Sbjct: 60  RERSKERSRDKRERERSKERK 80



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 681 KIEKVTKERRRKKQKSLRTRERE 613
           K  + +KER R K++  R++ER+
Sbjct: 58  KYRERSKERSRDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 663 KERRRKKQKSLRTREREREKK 601
           +ER +++ +  R RER +E+K
Sbjct: 60  RERSKERSRDKRERERSKERK 80



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 681 KIEKVTKERRRKKQKSLRTRERE 613
           K  + +KER R K++  R++ER+
Sbjct: 58  KYRERSKERSRDKRERERSKERK 80


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 696 FKGAAKIEKVTKERRRKKQKSLRTREREREKK 601
           +K   K  K  +ER +++ +    RER RE K
Sbjct: 50  YKNERKYRKY-RERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 696 FKGAAKIEKVTKERRRKKQKSLRTREREREKK 601
           +K   K  K  +ER +++ +    RER RE K
Sbjct: 50  YKNERKYRKY-RERSKERSRDRTERERSREPK 80


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -1

Query: 461 NRIEREIIKLNNSLVKYPQGTSGHTNIN------LQIREKXKELQALKQRERDIIKEQRH 300
           NRI R  + L    +   +  +G  N++      +Q+R+  K     K++E  II E   
Sbjct: 38  NRISRNRVLLRGQCISSRR--NGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSS 95

Query: 299 RKE 291
           RK+
Sbjct: 96  RKQ 98


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 681 KIEKVTKERRRKKQKSLRTRERE 613
           K  + +KER R K +  R++ER+
Sbjct: 296 KYRETSKERSRDKTERERSKERK 318


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 663 KERRRKKQKSLRTREREREKK 601
           +ER +++ +    RER RE K
Sbjct: 293 RERSKERSRDRTERERSREPK 313


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 518 KQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSL 420
           K  TSK +N E   I+E  N  +      NN++
Sbjct: 553 KPETSKGINAEPSNIEESNNMTDSFTRIANNTI 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,564
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)