Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0170
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12230.1 68418.m01435 expressed protein 36 0.036
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 32 0.44
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 31 0.58
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 31 1.0
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 1.0
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 1.3
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 30 1.3
At1g51590.1 68414.m05808 mannosyl-oligosaccharide 1,2-alpha-mann... 30 1.3
At4g13070.1 68417.m02038 group II intron splicing factor CRS1-re... 29 3.1
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.1
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 29 3.1
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 29 4.1
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 28 5.4
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 5.4
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 7.2
At2g38070.1 68415.m04673 expressed protein and genscan 28 7.2
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 7.2
At5g55650.1 68418.m06939 hypothetical protein 27 9.5
At5g53220.1 68418.m06616 expressed protein ; expression support... 27 9.5
At5g52280.1 68418.m06488 protein transport protein-related low s... 27 9.5
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 9.5
At4g36980.1 68417.m05240 expressed protein 27 9.5
At3g58050.1 68416.m06471 expressed protein 27 9.5
At3g56470.1 68416.m06280 F-box family protein similar to F-box p... 27 9.5
At2g41960.1 68415.m05191 expressed protein 27 9.5
At1g65320.1 68414.m07407 CBS domain-containing protein contains ... 27 9.5
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 27 9.5
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 35.5 bits (78), Expect = 0.036
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Frame = -1
Query: 593 NFINRTLGDKE--QTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSL 420
++++ +GD E + E D + QS ++ I+ F IDE +E +LN+
Sbjct: 46 HYLHNVVGDTEIRKGEGMQLDQLIESISQSRETNIRIQPFDIDE-----LQESFQLNDMT 100
Query: 419 -VKYPQGTSGHTNINLQIRE--KXKELQALKQRERDIIKEQRHRKEKEK 282
V+ P G I + + K ++ + K ++RD K++ H+K K K
Sbjct: 101 PVELPPAEKGAPTIPSKSKSESKDRDRKHKKHKDRDKDKDREHKKHKHK 149
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 31.9 bits (69), Expect = 0.44
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 458 RIEREIIKLNNSLVKYPQGTSGH-TNIN-LQIR-EKXKELQALKQRERDIIKEQRHRKEK 288
+++ EI++LN L + + H I L+ R K EL K+RERD +EQR RKEK
Sbjct: 415 KLQDEILRLNTDLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERD--EEQRKRKEK 472
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = -1
Query: 470 EDVNRIEREIIKLNNSLVKYPQG-TSGHTNINLQI-REKXKELQALKQRERDIIKEQ 306
ED R + ++KL +S +K QG TSG + + +EK ++ +++ ERDI+ +Q
Sbjct: 546 EDEIRGLKMMLKLRDSAIKSLQGVTSGKIPVEAHLQKEKGDLMKEIEEGERDILNQQ 602
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = -1
Query: 500 DLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQIREKXKELQALKQ 333
DL+++ + +++VN ++ +I ++NNSL K+ + T R +LQALKQ
Sbjct: 597 DLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRK------RYIESKLQALKQ 646
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 675 EKVTKERRRKKQKSLRTREREREKK 601
E+ KE+R+ K K R +EREREK+
Sbjct: 811 ERDEKEKRKDKDKERREKEREREKE 835
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -3
Query: 675 EKVTKERRRKKQKSLRTREREREK 604
EK+ +E+ R+++K R +EREREK
Sbjct: 150 EKLEREKEREREKIEREKEREREK 173
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 663 KERRRKKQKSLRTREREREK 604
KER R+++K R +EREREK
Sbjct: 143 KEREREREKLEREKEREREK 162
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 424 ELFNFIISRSILFTSSSILNFSIFKSLLVDCLTSTSVGSQLLVSVCSLSPKV 579
++F F+ +I+ T ++I + S+ K LLV CL G L++ ++ PK+
Sbjct: 1856 KVFVFVSILTIIITLANICHLSV-KDLLVSCLAFLPTGWGLILIAQAVRPKI 1906
>At1g51590.1 68414.m05808 mannosyl-oligosaccharide
1,2-alpha-mannosidase, putative similar to
mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
max][GI:6552504]
Length = 560
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = -1
Query: 506 SKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGT---SGHTNINLQIREKXKE 351
+++ +E FK++E+V+R+E+ + +LN + P T + ++ Q R+K KE
Sbjct: 49 AREHEVEVFKLNEEVSRLEQMLEELNGGVGNKPLKTLKDAPEDPVDKQRRQKVKE 103
>At4g13070.1 68417.m02038 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 343
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -1
Query: 548 NNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQI 369
N P + + SKD +EK++ ++ + I KL L +Y + + H +
Sbjct: 270 NYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVARHKKKKDEE 329
Query: 368 REKXKE 351
EK KE
Sbjct: 330 AEKKKE 335
>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein low similarity to SP|Q99614
Tetratricopeptide repeat protein 1 {Homo sapiens};
contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
Domain
Length = 697
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 690 GAAKIEKVTKERRRKKQKSLRT 625
GAA++ K+ KER RKK+K T
Sbjct: 194 GAARLRKIVKERLRKKKKKSMT 215
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = -1
Query: 584 NRTLGDKEQTETNNCDPTE-VDVKQSTSKDLNIEKFKIDEDVNRIER-EIIKLNNSLVKY 411
N KE + + TE + ++ K+ E + +++ N E+ E K+N K
Sbjct: 117 NEEAAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKT 176
Query: 410 PQGTSGHTNINLQIREKXKELQALKQRERDIIKEQRHRKE 291
G G T I +EK E + +E +++++++ E
Sbjct: 177 EAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESME 216
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/72 (20%), Positives = 39/72 (54%)
Frame = -1
Query: 494 NIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQIREKXKELQALKQRERDII 315
++E K DE++NR+E + + L+ P+ + +++E K L + E++++
Sbjct: 663 SVEMVKKDENINRMEINLQEAAKELLTLPKVLEEREEMWKEVKECRKRNMDL-ESEKEML 721
Query: 314 KEQRHRKEKEKM 279
K++ + E++ +
Sbjct: 722 KKKVEKLEEDTL 733
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/100 (26%), Positives = 44/100 (44%)
Frame = -1
Query: 575 LGDKEQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTS 396
L D+ TE D +D+ L +E +++ I+R +IKL + T
Sbjct: 457 LADRYITERFLPDKA-IDLVDEAGAKLKMEITSKPTELDGIDRAVIKLEMEKLSLKNDTD 515
Query: 395 GHTNINLQIREKXKELQALKQRERDIIKEQRHRKEKEKMT 276
+ LQ E +L LKQ+++++ + KEK MT
Sbjct: 516 KASKERLQKIE--NDLSTLKQKQKEL--NVQWEKEKSLMT 551
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 675 EKVTKERRRKKQKSLRTREREREKK 601
E+ KER R+K + R RERE +K
Sbjct: 142 ERKDKEREREKDRERREREREEREK 166
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 368 REKXKELQALKQRERDIIKEQRHRKEKEK 282
+EK K+ + K +E+D K+ H KEK K
Sbjct: 432 KEKAKDTKKEKGKEKDSEKKMEHEKEKGK 460
>At2g38070.1 68415.m04673 expressed protein and genscan
Length = 619
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Frame = -1
Query: 539 DPTEVDVKQSTSKDLNIEKFK-----IDEDV-NRIEREIIKLNNSLVKY-PQGTSGHTN 384
+ TE++ +Q KD+ E FK IDE V E E K+ + +++ PQ T+ TN
Sbjct: 177 EETEIESEQDNEKDIKFETFKEPRSVIDEIVEEEEEEETKKVEDFTMEFNPQTTAKKTN 235
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = -3
Query: 684 AKIEKVTKERRRKKQKSLRTREREREKK 601
AK E++ K+RRR++++ R RE +++KK
Sbjct: 1114 AKNEEINKKRRREERRD-RYREEDKQKK 1140
>At5g55650.1 68418.m06939 hypothetical protein
Length = 154
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 334 CFKACSSLXFSLICRLIFV*PLVP*GYLTNE-LFNFIISRSILFTSSSILNFSIFKSLLV 510
CF + SL F L+ + V L +L ++ + + I+ +ILF SSS+ IFK
Sbjct: 15 CFLSQLSLLFFLVTLISSVAFLC---FLNSQGVSSLTITMAILFVSSSVFLLRIFKEKTR 71
Query: 511 DCLTSTSVG 537
CL S G
Sbjct: 72 LCLAEGSQG 80
>At5g53220.1 68418.m06616 expressed protein ; expression supported
by MPSS
Length = 441
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/81 (22%), Positives = 42/81 (51%)
Frame = -1
Query: 551 TNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQ 372
T+N + E + + S S+ +++ F ID+D ++ E K + V+ G G+ ++ +
Sbjct: 254 TDNAEDDETEEEGSESEGESLDGFIIDDDDSQ-ESVSEKSDEIGVEESDGEVGYADVMSR 312
Query: 371 IREKXKELQALKQRERDIIKE 309
+R + K + + E D++ +
Sbjct: 313 LRREKKPEKRKWEYEADMLAD 333
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 27.5 bits (58), Expect = 9.5
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -1
Query: 563 EQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTN 384
EQ E +N + +D SKD+ IDE ++IE KL ++Y +
Sbjct: 477 EQQECSNAEDEYLD-----SKDI------IDELKSQIEILEGKLKQQSLEYSECLITVNE 525
Query: 383 INLQIREKXKELQALKQR-ERDIIKEQRHRKEKEKMTI 273
+ Q++E KEL+ Q + DI R + E+E+ I
Sbjct: 526 LESQVKELKKELEDQAQAYDEDIDTMMREKTEQEQRAI 563
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = -3
Query: 681 KIEKVTKERRRKKQKSLRTREREREK 604
++E+ +ERR+++++ LR ++RE E+
Sbjct: 367 EMERQDRERRKEEERLLREKQREEER 392
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 693 KGAAKIEKVTKERRRKKQKSLRTREREREK 604
KG I+K++++ RRK + R RERE +
Sbjct: 247 KGDPSIKKLSRKERRKVSRIERDRERETSR 276
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 678 IEKVTKERRRKKQKSLRTREREREKK 601
+E+ KE+R ++++ + R +EREKK
Sbjct: 532 LEEEEKEKREEEERKEKKRSKEREKK 557
>At3g56470.1 68416.m06280 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 367
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 669 VTKERRRKKQKSLRTREREREKKCFQFY 586
VT+ R +KK+K+ R ++ +EK+ +Q +
Sbjct: 2 VTRRRSKKKKKTKRKKQSSKEKEKYQTF 29
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 678 IEKVTKERRRKKQKSLRTREREREKK 601
+E+ KE+R ++++ R R +EREKK
Sbjct: 501 LEEEEKEKREEEERKERKRIKEREKK 526
>At1g65320.1 68414.m07407 CBS domain-containing protein contains
Pfam profile PF00571: CBS domain
Length = 425
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 596 FNFINRTLGDKEQTETNNCDPTEVDVKQSTSKDLNIEKFKIDEDVN 459
+NFI +L E T CDP+ + V + T N ++FKI +++
Sbjct: 224 YNFIEASLPAIEATRRPLCDPSAIAVLEQTE---NEQQFKIIGEIS 266
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/80 (21%), Positives = 34/80 (42%)
Frame = -1
Query: 536 PTEVDVKQSTSKDLNIEKFKIDEDVNRIEREIIKLNNSLVKYPQGTSGHTNINLQIREKX 357
PT+V + +L + +I ED+ + + +I L K + + EK
Sbjct: 43 PTKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKL 102
Query: 356 KELQALKQRERDIIKEQRHR 297
KE A ++R + + ++ R
Sbjct: 103 KEALAAQKRAEESFEVEKFR 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,102
Number of Sequences: 28952
Number of extensions: 175655
Number of successful extensions: 912
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -