Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0169
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0598 - 26514226-26514545,26516080-26516302 41 2e-04
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 40 6e-04
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 39 8e-04
04_03_0975 - 21370715-21370877,21371227-21371319,21371383-213714... 38 0.002
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 38 0.002
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 37 0.003
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 37 0.003
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 36 0.007
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 34 0.022
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 34 0.022
03_06_0330 - 33178114-33178206,33178317-33178382,33179704-331798... 33 0.038
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 32 0.087
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 32 0.12
04_04_1575 + 34548774-34549109,34549979-34550185 29 1.1
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 28 1.4
01_05_0180 + 18980059-18980165,18980280-18980378,18982007-189820... 28 1.9
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 27 2.5
06_02_0146 - 12274721-12274989,12275090-12275240 27 2.5
11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423... 27 3.3
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 27 3.3
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 26 5.7
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 26 5.7
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 26 5.7
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 26 7.6
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 213
CK + V+ +L K E K +C + + +++ QY V S+PT+++FKNG + D +
Sbjct: 106 CKMIDPVVGKLSKEYE---GKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVI 162
Query: 214 GA 219
GA
Sbjct: 163 GA 164
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 213
CK + V+ +L K E K C + + +++ Q+ + S+PT+++FKNG + D +
Sbjct: 139 CKMIDPVIGKLSKEYE---GKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVI 195
Query: 214 GA 219
GA
Sbjct: 196 GA 197
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKA-QSLNKSPAEIT 285
D + L+EV+ ++V+++PT +L + G +V RI GAD ++ I +S + S A T
Sbjct: 81 DVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTINTLRSSSSSTATTT 138
>04_03_0975 -
21370715-21370877,21371227-21371319,21371383-21371466,
21371745-21371869,21372360-21372600,21373640-21373734
Length = 266
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 213
C+ V +++E+ + + + +C D + +V+ Y ++ +PTV+LFK+G + I
Sbjct: 48 CRMVHRIVDEIA---QEYAGRIKCYKLDTDDYPQVATSYSIERIPTVLLFKDGEKTHSIT 104
Query: 214 G 216
G
Sbjct: 105 G 105
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAE 279
+AE E+S Y V +VP + K G VD ++GA+ A ++ K+ + S AE
Sbjct: 58 EAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKLAGPASVAE 112
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKI 246
D + L+ V+ ++ V SVP+ +NG ++D++ GAD + K+
Sbjct: 697 DIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGADKNGLERKV 740
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKA 252
D + L + S + + + PT KNG QVD++ GA+ ++ K+ A
Sbjct: 581 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKVAA 626
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGA 219
D + L EV+ +Y V+++PT + K+G + D++ GA
Sbjct: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA 100
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 34.3 bits (75), Expect = 0.022
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIK 249
D + L ++ Q+ V+++PT + K G DR+ GA ++++K++
Sbjct: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLE 116
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 34.3 bits (75), Expect = 0.022
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKA 252
D + L + S + + + PT KN QVD++ GA+ ++ K++A
Sbjct: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQA 127
>03_06_0330 -
33178114-33178206,33178317-33178382,33179704-33179826,
33179930-33180067
Length = 139
Score = 33.5 bits (73), Expect = 0.038
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQ 198
D + LSEV+ Q+KV+++PT +L K G +
Sbjct: 82 DVDELSEVARQWKVEAMPTFVLIKGGKE 109
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 32.3 bits (70), Expect = 0.087
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDS-VPTVILFKNGTQVDRIDGADAAQISTKIK 249
D++ L V+ Y ++ VPT K+G ++D+I GA+ + KI+
Sbjct: 1036 DSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIR 1081
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVD 204
CK++ L+E + S+ A +A+ ++ +Y VD PT++LF +GT +
Sbjct: 78 CKRLAPQLDEAAPVLAGLSTPIVVAKVNADKYKKLGSKYGVDGFPTLMLFDHGTPTE 134
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQV--DRIDGA 219
D +A ++ +YKV +P++ILFK+G +V R +GA
Sbjct: 124 DHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGA 160
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQ 231
+A+ LS +YKV +V ++L K+GT I G AA+
Sbjct: 661 EAKTLSWSGERYKVVTVDGILLTKSGTMTGGISGGMAAR 699
>01_05_0180 +
18980059-18980165,18980280-18980378,18982007-18982069,
18982622-18982757,18983698-18983881,18984276-18984397,
18984477-18984617
Length = 283
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 291 LRGYFCRTLIKTLCFNFCANLSSIC 217
L G+FC+ +IKTL L S+C
Sbjct: 137 LTGWFCKPMIKTLRLQLSIRLFSLC 161
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNG 192
C+Q+T + E K + A DA+A E++ +Y + PT+ +F G
Sbjct: 62 CQQLTPIWE---KAAGVLKGVATVAALDADAHKELAQEYGIRGFPTIKVFVPG 111
>06_02_0146 - 12274721-12274989,12275090-12275240
Length = 139
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 145 QYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKA 252
++++ VPT+I ++NG R+ G D A ++ K+ A
Sbjct: 99 RFRLTGVPTLIRWENGAAAARL-GDDEAHLADKVDA 133
>11_06_0335 +
22441240-22441548,22441958-22442028,22442321-22442381,
22443252-22443326,22443431-22443478,22443565-22443666,
22443971-22444032,22444187-22444284,22444361-22444470
Length = 311
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 154 VDSVPTVILFKNGTQVDRIDG 216
+ ++P VILFK G VDR+ G
Sbjct: 233 IKTLPCVILFKKGIAVDRLVG 253
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 232 ISTKIKAQSLNKSPAEITPQKLE 300
I+TK KA+ + PAE +P KLE
Sbjct: 79 IATKYKAEGADLLPAEASPAKLE 101
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 287 GVISAGLLLRLCALIFVLI*AASAPSILST 198
GV+ A LLL A F+L+ A+A ++ ST
Sbjct: 6 GVLQAALLLAAAAAAFLLVSPAAAAAVNST 35
>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 163 VPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEITPQKLEDRLKAL 318
+ T LF+N Q+D ++ +A I + + Q N S +TP KL D K +
Sbjct: 1269 ISTECLFEN--QLDDLEPEEAVAIMSALVFQQRNTSEPSLTP-KLADARKRI 1317
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 28 EQCKQVTDVLEELL-KLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQV 201
+QC +++ + L + P I K + A A +E V +VPT ++KNGT+V
Sbjct: 599 QQCCKISPFVNTLCTRYPSISFLKVDISESPAVARAE-----NVRTVPTFKIYKNGTRV 652
>10_08_0472 -
18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 151 KVDSVPTVILFKNGTQVDRIDGAD 222
K D V T+I FKN +D +D A+
Sbjct: 209 KGDEVQTIIKFKNALGLDDVDAAN 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,174,768
Number of Sequences: 37544
Number of extensions: 117716
Number of successful extensions: 315
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -