Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0169
(321 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 33 0.039
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.068
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.068
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 30 0.48
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 29 0.84
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 29 0.84
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 28 1.9
SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1) 28 1.9
SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16) 27 2.6
SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1) 27 2.6
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_15033| Best HMM Match : Dynein_light (HMM E-Value=4) 27 3.4
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 27 4.5
SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 26 7.9
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 213
CK +T L+ ++ Q K A D + + E++ + V++VPTVI K G +++ +
Sbjct: 6 CKVLTPRLDAIIAE---QDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVINKFE 62
Query: 214 G 216
G
Sbjct: 63 G 63
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 33.5 bits (73), Expect = 0.039
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 115 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIK 249
D + E++ + V ++PT FKN +VD + GAD + IK
Sbjct: 65 DVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIK 109
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 32.7 bits (71), Expect = 0.068
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRI 210
CK +T L+ ++ Q K A D + + E++ + V++VPTVI K G ++ +
Sbjct: 52 CKVLTPRLDAIIAE---QDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVMEHV 107
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 32.7 bits (71), Expect = 0.068
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 213
CKQ+ E+ + + A+ DA SE++ +Y+V PT+ +F+ G +
Sbjct: 208 CKQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATEYKG 267
Query: 214 GADAAQISTKIKAQ 255
D I++ +++Q
Sbjct: 268 QRDQYGIASYMRSQ 281
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 29.9 bits (64), Expect = 0.48
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 166 PTVILFKNGTQVDRIDGADAAQISTKIK 249
P V KN VDRIDGA+A +++ K++
Sbjct: 51 PHVNFIKNQKVVDRIDGANAPELTKKVE 78
Score = 29.1 bits (62), Expect = 0.84
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 34 CKQVTDVLEELLK-LPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVIL 180
C Q+ DVLEEL K P + K Q V + + L KV+ ++IL
Sbjct: 36 CNQMNDVLEELAKENPHVNFIKNQKVVDRIDGANAPELTKKVEHHASIIL 85
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 85 QSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQI 234
+ S+ + A DA A +++ +++V PT+ FK+G + G A +I
Sbjct: 73 EKSEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKPSEYAGGRTAPEI 122
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 29.1 bits (62), Expect = 0.84
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 34 CKQVTDVLEEL-LKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRI 210
CK + V L +K ++ K C A S + ++PT + N ++D +
Sbjct: 43 CKSIAPVFTNLSMKFMDVVFLKVDVDQCQLTAES-----CGIRAMPTFHFYHNKAKIDEL 97
Query: 211 DGADAAQISTKIK 249
GAD + KIK
Sbjct: 98 RGADPGALENKIK 110
>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1173
Score = 27.9 bits (59), Expect = 1.9
Identities = 8/38 (21%), Positives = 23/38 (60%)
Frame = +1
Query: 199 VDRIDGADAAQISTKIKAQSLNKSPAEITPQKLEDRLK 312
+ ++DG + ++S K L +P ++TP+++ + ++
Sbjct: 237 ISKLDGVQSVKVSLDDKCARLEFAPEKVTPEQMREAIE 274
>SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 166 PTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEI 282
P+V LFKN Q DR+ ADA +S S+ A++
Sbjct: 117 PSVNLFKNYLQPDRVRLADAMALSAAALGTSMGSYNAQM 155
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 76 PEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDG-ADAAQISTKIKA 252
P + +K C EA + +Y V PT+ +F+NG DG D++ I +K
Sbjct: 589 PPVPLAKVDCT----EAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDGPRDSSGIIRYMKK 644
Query: 253 QSLNKSPAEITPQKLEDRL 309
Q+ S + LE +L
Sbjct: 645 QAGPSSVEIKSVDHLEKKL 663
>SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
Length = 578
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 166 PTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEI 282
P+V LFKN Q DR+ ADA +S S+ A++
Sbjct: 507 PSVNLFKNYLQPDRVRLADAMALSAAALGTSMGSYNAQM 545
>SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16)
Length = 423
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 315 SF*SIFKFLRGYFCRTLIKTLCFNFCAN--LSSICSINPVYLSSIL 184
+F IF F R + RT+ TL N A LSSI P +LS IL
Sbjct: 67 NFFIIFSFFRNFKMRTITNTLVVNLSAADLLSSIFDF-PFWLSIIL 111
>SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 315 SF*SIFKFLRGYFCRTLIKTLCFNFCAN--LSSICSINPVYLSSIL 184
+F IF F R + RT+ TL N A LSSI P +LS IL
Sbjct: 67 NFFIIFSFFRNFKMRTITNTLVVNLSAADLLSSIFDF-PFWLSIIL 111
>SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
Length = 623
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 166 PTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEI 282
P+V LFKN Q DR+ ADA +S S+ A++
Sbjct: 450 PSVNLFKNYLQPDRVRLADAMALSAAALGTSMGSYYAQM 488
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 25 PEQCKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVS 141
PE C V D+ + L K ++ CA D E + E++
Sbjct: 275 PEMCFGVRDIAKALSKNTNLEQLSVACAGIDDEGMCELA 313
>SB_15033| Best HMM Match : Dynein_light (HMM E-Value=4)
Length = 434
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 97 TQCAVCDAEALSE---VSLQYKVDSVPTV--ILFKNGTQVDRIDGADAAQISTKIKAQSL 261
T+CA D +A SE VS++ + D+VP + + ++G Q + D K++ + +
Sbjct: 227 TECAEADVQATSEVTVVSVETQTDAVPKIENDVLRSGLQDENRKEKDLGASCGKLQEERV 286
Query: 262 NK 267
+K
Sbjct: 287 SK 288
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 157 DSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEITPQKLEDRLK 312
D V TV + +VDR++G A ++ KIK + + K+E+ +K
Sbjct: 1692 DFVLTVDYYSGFFEVDRLEGKTAKEVMRKIKPHVTSSPGYAQSNGKVENAIK 1743
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 34 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGT 195
CKQ+ E+L + QSS A DA+ ++ ++ V PT+ F G+
Sbjct: 54 CKQLAPTYEQLGEA-YTQSSDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGS 106
>SB_1173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 166 ALNLPYIARKLQKVPRHHKQHIVSC 92
AL +P IAR ++ +P KQH ++C
Sbjct: 161 ALRVPIIARLIRVLPLDKKQHGLAC 185
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 40 QVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGA 219
Q +E + ++P I ++T C+A ++++ S TV+ N + R+ G
Sbjct: 326 QYPPFIEVISRIPPITENQTLELYCNATGNPAPAIRWSKGSDVTVLSSGNPLTIRRVQGV 385
Query: 220 D 222
D
Sbjct: 386 D 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.131 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,728,604
Number of Sequences: 59808
Number of extensions: 151839
Number of successful extensions: 351
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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