Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0168
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9TCB0 Cluster: Ribosomal protein S3; n=1; Nephroselmis...    36   0.77 
UniRef50_Q6P518 Cluster: TDRD1 protein; n=1; Homo sapiens|Rep: T...    36   1.0  
UniRef50_P54675 Cluster: Phosphatidylinositol 3-kinase 3; n=5; E...    33   7.1  
UniRef50_Q3ZVI9 Cluster: Putative transmembrane protein; n=7; Sp...    32   9.4  
UniRef50_A7C0G9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.4  

>UniRef50_Q9TCB0 Cluster: Ribosomal protein S3; n=1; Nephroselmis
           olivacea|Rep: Ribosomal protein S3 - Nephroselmis
           olivacea
          Length = 309

 Score = 35.9 bits (79), Expect = 0.77
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 294 NISYERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNKDTNIDIVDAILMPEPNS 473
           N   +R ++   + +LT+   RKW+ P     + ++ SI+KN D +  +    LM   NS
Sbjct: 156 NQGKQRKNFRISQPFLTNNFTRKWLYPKDSFLQQVESSINKNVDCSTQV---FLMKSSNS 212

Query: 474 SLNTNKFVK 500
             + N FVK
Sbjct: 213 LSSANFFVK 221


>UniRef50_Q6P518 Cluster: TDRD1 protein; n=1; Homo sapiens|Rep:
           TDRD1 protein - Homo sapiens (Human)
          Length = 1045

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 309 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDK-NKDTNIDIVDAILMPEPNSSLNT 485
           RCS C +  + ++ C R+    +S+ C+ +Q +  K    ++I+  D  +  + +  L  
Sbjct: 159 RCSQCKQTYYCSTACQRRDWSAHSIVCRPVQPNFHKLENKSSIETKDVEVNNKSDCPLGV 218

Query: 486 NKFVKLWKSKFFITTSVRSLQ 548
            K + +W  +    + +RSLQ
Sbjct: 219 TKEIAIWAERIMF-SDLRSLQ 238


>UniRef50_P54675 Cluster: Phosphatidylinositol 3-kinase 3; n=5;
            Eukaryota|Rep: Phosphatidylinositol 3-kinase 3 -
            Dictyostelium discoideum (Slime mold)
          Length = 1585

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 432  IDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTSVRSLQR 551
            +D V+ I++ +P  SLN  + + +WKS++F  T  ++L +
Sbjct: 959  MDRVEQIILQDPLYSLNKEERLLIWKSRYFCHTKPQALSK 998


>UniRef50_Q3ZVI9 Cluster: Putative transmembrane protein; n=7;
           Spiroplasma|Rep: Putative transmembrane protein -
           Spiroplasma citri
          Length = 190

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 333 KWLTSGCLRKWIKPNSMECKHLQRSIDKNKDTNIDIVDAILMPEPNSSLNTNKFVKLWKS 512
           KWL +G    WI P       +QR IDK+ D   ++   I+   P   LNT    ++W +
Sbjct: 135 KWLRNGGQIYWITPTQTLANWIQRQIDKD-DFKTELQQVIIW--PTHELNT---YEIWNN 188

Query: 513 K 515
           K
Sbjct: 189 K 189


>UniRef50_A7C0G9 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. PS
          Length = 148

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 375 NSMECKHLQRSIDKNKDTNIDIVDAILMPEPNSSLNTNKFVK 500
           +S+  K + +++ KNKD +ID ++ +    PN  +N N+++K
Sbjct: 22  SSVIAKRIYQALTKNKDVHIDELEELENLSPNDGVNFNEWLK 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,421,897
Number of Sequences: 1657284
Number of extensions: 9443841
Number of successful extensions: 22249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22245
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)