Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0168
         (615 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063133-1|AAH63133.1| 1045|Homo sapiens TDRD1 protein protein.        36   0.15 
BC035010-1|AAH35010.1| 1179|Homo sapiens TDRD1 protein protein.        36   0.15 

>BC063133-1|AAH63133.1| 1045|Homo sapiens TDRD1 protein protein.
          Length = 1045

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 309 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDK-NKDTNIDIVDAILMPEPNSSLNT 485
           RCS C +  + ++ C R+    +S+ C+ +Q +  K    ++I+  D  +  + +  L  
Sbjct: 159 RCSQCKQTYYCSTACQRRDWSAHSIVCRPVQPNFHKLENKSSIETKDVEVNNKSDCPLGV 218

Query: 486 NKFVKLWKSKFFITTSVRSLQ 548
            K + +W  +    + +RSLQ
Sbjct: 219 TKEIAIWAERIMF-SDLRSLQ 238


>BC035010-1|AAH35010.1| 1179|Homo sapiens TDRD1 protein protein.
          Length = 1179

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 309 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDK-NKDTNIDIVDAILMPEPNSSLNT 485
           RCS C +  + ++ C R+    +S+ C+ +Q +  K    ++I+  D  +  + +  L  
Sbjct: 180 RCSQCKQTYYCSTACQRRDWSAHSIVCRPVQPNFHKLENKSSIETKDVEVNNKSDCPLGV 239

Query: 486 NKFVKLWKSKFFITTSVRSLQ 548
            K + +W  +    + +RSLQ
Sbjct: 240 TKEIAIWAERIMF-SDLRSLQ 259


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,279,072
Number of Sequences: 237096
Number of extensions: 1438930
Number of successful extensions: 2195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2195
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)