Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0168
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    29   2.6  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    29   2.6  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   8.1  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   8.1  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   8.1  

>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 442 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 317
           TIS ++ ++F SI  C CLHS  F LI+ R    + +LR   Y
Sbjct: 6   TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 442 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 317
           TIS ++ ++F SI  C CLHS  F LI+ R    + +LR   Y
Sbjct: 6   TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = -3

Query: 595 LSLQIESAPRDLPKYLCKDLTLV--VIKNLLFQSFTNLLVFRDELGSGIRIASTISIFVS 422
           ++  + + PR  P    K L  V  + K +L  +F ++    ++L SG+ I S  S+F S
Sbjct: 77  IAQMMNTCPRGFPIQDIKGLWHVTRISKRMLHTTFVDIHEAIEKLSSGLSIGSRKSLF-S 135

Query: 421 LFLS--ILRC 398
           LF S  ++RC
Sbjct: 136 LFKSDPVMRC 145


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 306 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 407
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 662


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 306 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 407
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 565


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 306 ERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 407
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,437,114
Number of Sequences: 27780
Number of extensions: 241783
Number of successful extensions: 589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)