Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0168
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.1  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 309 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS-IDKNKDTNIDI-VDAILMPE 464
           RC YC  +K L  G  R+ ++      K   +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 309 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS-IDKNKDTNIDI-VDAILMPE 464
           RC YC  +K L  G  R+ ++      K   +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 502 SFTNLLVFRDELGSGIRIASTISIFVSLFLSIL 404
           SF ++LVF     SG +++ +ISI +SL +  L
Sbjct: 251 SFLSVLVFYLPSDSGEKVSLSISILLSLTVFFL 283


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = +3

Query: 309 RCSYCNR---RKWLTSGCLRKWIKPNSMECKHLQRS 407
           +C  C +   R WL  G +R         C+H  R+
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 502 SFTNLLVFRDELGSGIRIASTISIFVSLFLSIL 404
           SF  +LVF     SG +++ +ISI +SL +  L
Sbjct: 255 SFLTVLVFYLPSDSGEKVSLSISILLSLTVFFL 287


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 291 MNISYERCSYCNRRKWLTSGCLRKWIK 371
           + I+  RC YC  +K +  G  R  ++
Sbjct: 113 LRINRNRCQYCRLKKCIAVGMSRDAVR 139


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 291 MNISYERCSYCNRRKWLTSGCLR 359
           + I+  RC YC  +K +  G  R
Sbjct: 64  LRINRNRCQYCRLKKCIAVGMSR 86


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 423 DTNIDIVDAILMPEPNSSLNTNKF 494
           D   DI+  I +PEP    N  K+
Sbjct: 641 DAQFDIIQNIYIPEPQDIENIFKY 664


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 224 KSHKSIYDEKYD 189
           KSH  IY EKY+
Sbjct: 156 KSHNDIYCEKYE 167


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 535 TLVVIKNLLFQSFTNLLVFRDELGSGIRIASTISIFVSLFLSIL 404
           T+ +I   +  SF  +LVF     +G ++   ISI +SL + +L
Sbjct: 237 TVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLL 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,027
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)