Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0168
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05140.1 68416.m00558 protein kinase family protein contains ...    30   1.1  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   7.5  
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At5g15500.2 68418.m01815 ankyrin repeat family protein contains ...    27   9.9  
At5g15500.1 68418.m01814 ankyrin repeat family protein contains ...    27   9.9  

>At3g05140.1 68416.m00558 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 460

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 429 NIDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTSVRSLQRYFGKSRGADSICKLNKSND 608
           N D    +      +S N  KF KLWK +     S++ L  +   S  A  I K NKS D
Sbjct: 56  NADADTDVQCKNHRASSNWGKFFKLWKRR-----SMKRLSSFPPLSGAAPPIIKQNKSAD 110

Query: 609 P 611
           P
Sbjct: 111 P 111


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 418 FLSILRCKC-LHSIEFGLIHLRRHPLVSHLRRLQYEHR 308
           F   + CK  LH +   L   +R+ L SHL RLQY  R
Sbjct: 298 FFKCVECKFFLHKVCASLPRKKRNILHSHLLRLQYGDR 335


>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 223 NRTNPFTTKNMITSTSKTRYVQVLNT*IAQLLLS 122
           NRT P T  N+ TSTS  R   ++   +A   +S
Sbjct: 20  NRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMS 53


>At5g15500.2 68418.m01815 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 457

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 340 SLVDVYVNGLNQILWNVNIYNAVXXXXXXXXXXXWMLFLCQ 462
           S+VD  VNG N +   VN Y+             W+L LCQ
Sbjct: 132 SIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQ 172


>At5g15500.1 68418.m01814 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 351

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 340 SLVDVYVNGLNQILWNVNIYNAVXXXXXXXXXXXWMLFLCQ 462
           S+VD  VNG N +   VN Y+             W+L LCQ
Sbjct: 26  SIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQ 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,914
Number of Sequences: 28952
Number of extensions: 217246
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)