Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0167
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O60082 Cluster: Uncharacterized protein C1494.08c; n=1;...    33   5.2  
UniRef50_Q57W85 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  

>UniRef50_O60082 Cluster: Uncharacterized protein C1494.08c; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C1494.08c - Schizosaccharomyces pombe (Fission yeast)
          Length = 274

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 256 DGQETHSLIQHIYL*QGIRQE-AFRLRHSKDNINNKFMFHHLDLHTSDRRYKQASVMVDA 432
           DG+E       +Y   G+    A ++ HS  + N K    H+  HT + +Y    ++ D 
Sbjct: 169 DGKELKRRDDEVYTSTGLASAWAEKMLHSIKDFNQKTTVFHM--HTRNNKYDTREIVDDI 226

Query: 433 AVGGAGYRFGNRLAD 477
             GG G+    ++AD
Sbjct: 227 FFGGTGWAEPPKIAD 241


>UniRef50_Q57W85 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 934

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 483 ILISKPIAKTIPSTTHGSINHDRRLFIATIRSVQIK---MVKHKFIVNI 346
           ++I K + +  PS T  SIN  RRLF+ T+ SV ++    +   F+ N+
Sbjct: 126 LIIYKQLFRRRPSLTAFSINFSRRLFVTTVFSVLVQCLTSISKPFVYNV 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,595,398
Number of Sequences: 1657284
Number of extensions: 8791218
Number of successful extensions: 20162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20142
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)