Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0167
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     27   8.7  
07_01_0648 + 4866116-4866784                                           27   8.7  
03_05_0858 + 28309266-28311143                                         27   8.7  

>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 313 QEAFRLRHSKDNINNKFMFHHL----DLHTSDRRYKQASVMVDAA 435
           Q  FR    + N   +F FHHL    DLH +   Y+     V+AA
Sbjct: 804 QIRFRAEEMESNAGFEFSFHHLSSLEDLHATISCYRATRSSVEAA 848


>07_01_0648 + 4866116-4866784
          Length = 222

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 270 CFLTVHINMIVAIESMMPRIAVIRDPVRVEAQQQHF 163
           CFL VH+N ++  E +  R+  + D   VE  +++F
Sbjct: 139 CFLWVHVNEVILNEYLKHRVDDMVDAGLVEEIEEYF 174


>03_05_0858 + 28309266-28311143
          Length = 625

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 LHTSDRRYKQASVMVDAAVGGAGYR 456
           +H     YKQAS ++    GG GYR
Sbjct: 573 VHLGSNAYKQASTLLALFAGGDGYR 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,671
Number of Sequences: 37544
Number of extensions: 239716
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)