Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0167
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       29   2.9  
SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)                 29   3.8  
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)                     28   6.7  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 IISEQNEASSEMLLLCFYSDRVPDHCY-PRHHTFDSHNH 246
           IIS  N  S+ + + C  S   P H Y   HH   SHNH
Sbjct: 203 IISTINTTSTVITITCNISTTPPQHHYHHHHHNHYSHNH 241


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 501 VIDV*RILISKPIAKTIPSTTHGSINHDRRLFIA 400
           ++DV  ++ S P       TTH S++HD+RL  A
Sbjct: 293 LVDVYCMVSSDPTLSATADTTHTSLSHDKRLSTA 326


>SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)
          Length = 564

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +1

Query: 244 HIDMDGQETHSLIQHIYL*QGIRQEAFRLRHSKDNINNKFMFHHLDLHTSDRRYKQASVM 423
           H+D   +   S    ++L + +    +RL H  DN++++    HLD + S R Y+   + 
Sbjct: 286 HLD---ENVSSRTNRLHLDENVSSRTYRL-HLDDNVSSRTYRLHLDENESSRTYR---LH 338

Query: 424 VDAAVGGAGYRFGNRLADQYPSHIYYL 504
           +D  V    YR    L +   S  Y L
Sbjct: 339 LDENVSSRTYRL--HLDENVSSRTYRL 363


>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
          Length = 759

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 250 DMDG-QETHSLIQHIYL*QGIRQEAFRLRHSKDNINNKFMFHHLDLHTSDRRYKQAS 417
           DM G ++ H L Q +   Q   Q+ +  RH +DN  + +   HL L +SD    ++S
Sbjct: 507 DMYGPRQMHQLSQQVQHQQQELQQLYTQRHKRDNERDGYSASHL-LRSSDSTASRSS 562


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -3

Query: 262 DRPYQYDCGYRKYDAEDSSDQGPGPSRSTAAA 167
           +R Y  D GY     E SS  GP P RS AAA
Sbjct: 266 ERDYSSDRGYSSAPYERSS-YGPPPQRSPAAA 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,820
Number of Sequences: 59808
Number of extensions: 287833
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)