Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0167
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    29   3.1  
At3g54510.1 68416.m06032 early-responsive to dehydration protein...    28   4.1  
At2g28600.1 68415.m03476 expressed protein                             28   5.5  
At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    27   9.6  

>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 211 YPRHHTFDSHNHIDMDGQETHSLIQHIYL*QGIRQE-AFRLRHSKDNINNKFMFHHLDL- 384
           Y  HH  D HN  D D   T +L  HI L     QE A  L  S  + +++   HH D+ 
Sbjct: 104 YDHHHQDDHHNLDDDDHDVTVAL--HIGLPSPSAQEMASLLMMSSSSSSSRTTHHHEDMN 161

Query: 385 HTSDRRYKQASVMVDAAVGG 444
           H  D  ++ +      AVGG
Sbjct: 162 HKKDLDHEYS----HGAVGG 177


>At3g54510.1 68416.m06032 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 617

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 202 DHCYPRHHTFDSHNH-IDMDGQETHSLIQHIYL*QGIRQEAFRLRHSKDNINNKFMFHHL 378
           DH + +HH F  H+H +  DG++   L+      + +++E    RH++  I +     H 
Sbjct: 116 DHFFSKHHRFSYHSHQMLYDGRDLEYLLGKQ---KKLKKELEDKRHTE--ILSNGSQEHK 170

Query: 379 DLHTSDRRYKQASVMV 426
            + TS+ + ++ + M+
Sbjct: 171 QISTSEEKLREITHMI 186


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 267 FLTVHINMIVAIESMMPRIAVIRDPVRVEAQQQHF*RRFILF*DNFSAQIIYLIISLPAF 88
           FL   +N +   ES+  + + I   V V A ++   ++F    D+ S+++IY++    +F
Sbjct: 322 FLGGSVNRVTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSSSKLIYIVTKEESF 381

Query: 87  K 85
           K
Sbjct: 382 K 382


>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 127 GSDNISHNFFTGV*ITTLSTCL*VQFILFTINNLHSSV 14
           G+ ++SHNFF+G+  T+L     + ++  + NNL   +
Sbjct: 215 GTLDLSHNFFSGMIPTSLGNLPELLYVDLSYNNLSGPI 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,090,637
Number of Sequences: 28952
Number of extensions: 194988
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)