Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0166
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    31   0.71 
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    29   2.9  

>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 695 QVKNKSLTAKTKRKRDLRVIAILSHSLVRA-ETELVMKQRERA 570
           QV+ K +  K  +++   ++ IL HS  R  ETE  +KQRE+A
Sbjct: 868 QVREKEMEIKEMKEQMTELVTILRHSESRRRETEKQLKQREQA 910


>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
            24258994-24260065,24260241-24260563,24260647-24260835,
            24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/75 (21%), Positives = 38/75 (50%)
 Frame = -2

Query: 716  SLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLG 537
            S+++++  VK K        KRD+RV A+     V+   +    +RE  +  A+++ +  
Sbjct: 1008 SMTSFIPLVKQKQRPTTVCVKRDVRVKALEVAEAVKRREQKKQNEREMRKAAAELERERV 1067

Query: 536  LSNKEEEIARRHREK 492
               +E+++ +  ++K
Sbjct: 1068 KQEREQKLKQMEQKK 1082


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,616
Number of Sequences: 37544
Number of extensions: 331721
Number of successful extensions: 987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)