Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0166
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0) 31 1.3
SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_16411| Best HMM Match : DUF791 (HMM E-Value=0) 29 2.9
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 29 3.9
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 28 6.8
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_58642| Best HMM Match : DUF1150 (HMM E-Value=8.8) 28 9.0
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 28 9.0
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 28 9.0
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 9.0
>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1038
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = -2
Query: 659 RKRDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKIDYL 480
+KR+ + +++ S A+ E + + R +K ++V + + + ++H ++ D L
Sbjct: 776 KKREGKTRSMIVTSERDAKIEAMDLDQLREQK-TYIKVTQKHQKENDLLVKKHEKEKDKL 834
Query: 479 WKNDLSGLDSFFKELDNVKPILK 411
K+ D FKELD VK L+
Sbjct: 835 QKSHFLEQDKLFKELDRVKTALR 857
>SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -2
Query: 683 KSLTAKTKRKRDLRVIAILSHSLVRAETELV---MKQRERARKWAQMQVDLGLSNKEEEI 513
K K KR D +A+L S+ R E+ +++ +R RK A + + G
Sbjct: 233 KQKAMKRKRTPDFYKVAVLEKSIRRLNDEIADRCLRKTKRRRKSAAYEWNSGGHGWNTTA 292
Query: 512 ARRHREKIDYLWKNDLSGLDSFFKELDNVKP 420
+ + E DL G+D FF+EL P
Sbjct: 293 SFQDDE--------DLLGIDDFFRELSKCNP 315
>SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)
Length = 445
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 420 NTKVNLLGNLEQVFESVIYVGCFLNYSPIAFRVGLHPSAAILVA 289
N ++ L+G + +FES +Y+ FL ++P+ R +P I+ A
Sbjct: 244 NRRIMLIGIINSLFESAMYIFVFL-WTPVLDRHQQYPPLGIVFA 286
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -1
Query: 318 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKLEF 157
L S +ILVA G+ +L + W+C T SC LF + L + + F+ I+V L
Sbjct: 213 LFMSPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGS 271
Query: 156 QLYSY 142
++ Y
Sbjct: 272 EVIIY 276
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 672 SQDKEKARFESNRHLESLSSASRD*ARYETKRTCQEVG 559
S D+ A E RH ++L RD RY+ +R +G
Sbjct: 1750 SNDESPALAEKERHDKALEKYQRDYGRYQQRRKKSSIG 1787
>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 672 SQDKEKARFESNRHLESLSSASRD*ARYETKRTCQEVG 559
S D+ A E RH ++L RD RY+ +R +G
Sbjct: 29 SNDESPALAEKERHDKALEKYQRDYGRYQQRRQKSSIG 66
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -2
Query: 728 SKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHS-LVRAETE-LVMKQRERARKWAQ 555
S E+ NW+++ + KSLT+ T K++ ++ A+ + +R+E + L +ER Q
Sbjct: 151 SSKEARDNWIKK-EMKSLTS-TVAKKESQIQALQQETERLRSEFQRLETDIKERTDDLEQ 208
Query: 554 MQVDLGLSNKEEEIARRHREKI 489
+ + +NKE +R R+++
Sbjct: 209 RRSSIEQNNKEYSELKRKRDEL 230
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 672 SQDKEKARFESNRHLESLSSASRD*ARYETKRTCQEVG 559
S D+ A E RH ++L RD RY+ +R +G
Sbjct: 606 SNDESPALAEKERHDKALEKYQRDYGRYQQRRQKSSIG 643
>SB_58642| Best HMM Match : DUF1150 (HMM E-Value=8.8)
Length = 306
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 672 SQDKEKARFESNRHLESLSSASRD*ARYETKR 577
S DK A E RH ++L RD RY+ +R
Sbjct: 35 SNDKSPALAEKERHDKALEKYKRDYGRYQQRR 66
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 611 RAETELVMKQRERARKWAQMQVDLGL----SNKEEEIARRHREKI 489
RAE E +M++R+R +Q ++ G+ + EEE RHR +I
Sbjct: 30 RAEAERLMRKRDREEAASQGRLRRGILYDDDDDEEESRPRHRRRI 74
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 725 KTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAETELVMKQRERA-RKWAQMQ 549
+TE ++ +V + +RKR A V ETE V K+RER +K ++
Sbjct: 186 ETERVNKETERVNKERERVNKERKR-----ANKETERVNKETERVNKERERVNKKKERLN 240
Query: 548 VDLGLSNKEEEIARRHREKID 486
+ NKE+E + R++++
Sbjct: 241 KEKEQLNKEKEQLNKERKRLN 261
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 725 KTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAETELVMKQRERA-RKWAQMQ 549
+TE ++ +V + +RKR A V ETE V K+RER +K ++
Sbjct: 445 ETERVNKETERVNKERERVNKERKR-----ANKETERVNKETERVNKERERVNKKKERLN 499
Query: 548 VDLGLSNKEEEIARRHREKID 486
+ NKE+E + R++++
Sbjct: 500 KEKEQLNKEKEQLNKERKRLN 520
>SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 672 SQDKEKARFESNRHLESLSSASRD*ARYETKR 577
S DK A E RH ++L RD RY+ +R
Sbjct: 351 SNDKSPALAEKERHDKALEKYQRDYGRYQQRR 382
>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 681 VSH---SQDKEKARFESNRHLESLSSASRD*ARYETKR 577
VSH S D+ A E RH ++L RD RY+ +R
Sbjct: 285 VSHGFLSNDESPALAEKERHAKALEKYQRDYGRYQQRR 322
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 572 ARKWAQMQVDLGLSNKEEEIARRHREKIDYLWKNDLSGLDSFFKEL 435
A K ++ +L +NKE+E H + ++ KNDL L+ K +
Sbjct: 3201 ASKLFNLEYELETANKEKESLEEHVQDLEKSRKNDLDELNRLRKRV 3246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,992,053
Number of Sequences: 59808
Number of extensions: 391626
Number of successful extensions: 2008
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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