Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0166
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 500 GDAWRFPPLCW 532
           G+ WRFP LC+
Sbjct: 40  GNLWRFPYLCY 50


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 500 GDAWRFPPLCW 532
           G+ WRFP LC+
Sbjct: 93  GNLWRFPYLCY 103


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 378 ESVIYVGCFLNYSPIAFRVGLHPSAAILVAAG 283
           E++ YV    N SP+  RVG+H  A +    G
Sbjct: 350 EAIKYVQQTTN-SPVDMRVGIHTGAVLAGVLG 380


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 497 PGDAWRFPPLCWTIRGQLASEPTSWHVLFVS 589
           P D  ++P     ++GQ+   P S  +LFVS
Sbjct: 363 PQDVDKYPAEGLEMKGQMVHCPESDSILFVS 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 233  VHDTVLQTHFVAGSNHA 283
            V+   ++TH VAGSN A
Sbjct: 1567 VYQLKVETHNVAGSNQA 1583


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 233  VHDTVLQTHFVAGSNHA 283
            V+   ++TH VAGSN A
Sbjct: 1563 VYQLKVETHNVAGSNQA 1579


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 461 H*DHSSTNNRFFPGDAWRF-PPL 526
           H   S++  RF P +A+RF PPL
Sbjct: 377 HIGPSTSFPRFIPPNAYRFRPPL 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,036
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)