Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0166
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   4.2  
At5g49150.1 68418.m06083 hypothetical protein                          28   7.3  
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    28   7.3  

>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 641 VIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWKNDLS 462
           VIA ++HS  R   ++V K   R    A+M  DLG   +   + +    +I  L  N+LS
Sbjct: 410 VIAFMNHS--RQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467

Query: 461 --GLD 453
             GLD
Sbjct: 468 ARGLD 472


>At5g49150.1 68418.m06083 hypothetical protein
          Length = 896

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 486 IDFFPVTPGDFLLFVGQSEVNLHLSPLP 569
           IDF  VT G FLL V +    L+  PLP
Sbjct: 79  IDFVLVTSGKFLLLVEKESQTLNGGPLP 106


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -2

Query: 617 LVRAETELVMKQRERARKWA---QMQVDLGLSNKEEEIARRHREKIDYLWKNDLSGLDSF 447
           L  A+  L  KQRE+    A    M VD GL     +  ++HR+ +  + K++++ + + 
Sbjct: 631 LACAKKMLRKKQREQMLDDAYNKHMFVDEGLPKWFVDDEKQHRQPMKPVTKDEVNAMKAQ 690

Query: 446 FKELDNVKPILK 411
           FKE+ N +P  K
Sbjct: 691 FKEI-NARPAKK 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,568
Number of Sequences: 28952
Number of extensions: 268665
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)