Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0165
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    30   1.4  
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493...    29   2.4  
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741...    28   7.4  

>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 57  GNNSPSSGAKISTTTEFQRP---NIVKGT-PNVGRKTNQTMKQVTSSNQVNKEVTVQR 218
           G +SP SG KIS+  +   P    + K T P    KT  T K+  + N+V  +  V+R
Sbjct: 263 GGDSPGSGGKISSWKKLPSPAEKTLHKVTEPTTEEKTTPTKKKAITRNKVAVDEIVER 320


>12_01_0989 +
           10048036-10048125,10048232-10048816,10048930-10049331,
           10049419-10049477,10049711-10049801,10050243-10050329,
           10050723-10050791
          Length = 460

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 63  NSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEV 206
           +SPSSG+K  T++  +R  +     N     N++ +Q TSS   N+ +
Sbjct: 254 SSPSSGSKGPTSSAKRRSRLHSAKENSSPPNNESDQQATSSVPQNRSI 301


>03_06_0116 +
           31773295-31773603,31773800-31773946,31774080-31774158,
           31777558-31778180
          Length = 385

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 641 YSSRRNFQRFPKSGALYIGHWWSQPCGIWHSRIRRSHIW 525
           +S R    + PK   L + HWW      W     R+HI+
Sbjct: 228 FSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,908
Number of Sequences: 37544
Number of extensions: 281685
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)