Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0165
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027) 31 0.62
SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95) 30 1.4
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 29 2.5
SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 29 3.3
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15) 28 7.6
SB_32108| Best HMM Match : Fz (HMM E-Value=0.00039) 28 7.6
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5) 28 7.6
>SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027)
Length = 263
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 12 PRAAGIRHEAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNV-GRKTN 158
PRAA K+ GPG N+PSS I+T + +G P V GR+ +
Sbjct: 149 PRAANWPIVNKVPGPGVNTPSSKTDITTASPSSNTPDSQGPPGVYGRRND 198
>SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)
Length = 770
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 348 MNTNPTKNLEGIVVKQSVPNQRIRNTPIRPTLSKTMKLSNE--LVP 479
++ NPT+ L+ ++ K + P RI P+ PT S T+ ++ L+P
Sbjct: 630 VDLNPTQPLKNLLNKPANPVMRINGYPVNPTGSATLSQMDDGSLIP 675
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 329 YKCTSRLNVPHFFIDSFDSFRNGRSYFLYYCFCMRLISLYCNF 201
YK + LN+ HF D + R Y++ CF LI L F
Sbjct: 135 YKSSCALNIRHFPFDDQINIRRRSLYYVINCFTPCLIMLALTF 177
>SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 251
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 220 YLCTVTSLLTWLLDVTCFIVWFVLRPTFGVPLTMLGL*NSVVVLIFAPELG 68
++ TV SL+TWL V VWF+ VP+T N + L++A +G
Sbjct: 163 FIVTVMSLVTWLPHVIVQCVWFL----EAVPIT-FEQNNGTICLMYANSIG 208
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 161 DYETSDVE*PS**RSYSTKISDAYKNSNTRNNYDR-YENYQNCQ*RSAERSI*KYIYTAK 337
+Y T E +YSTK ++ Y + NN + ENY ++ E+ K
Sbjct: 154 NYSTKATENYKATENYSTKATENYSTKSKENNSTKATENYST---KATEKYSTKATENFS 210
Query: 338 SKGNEYEPNEKSRRYRSEAICTESEDKKYPYQTNFK*NY 454
+K E + + +Y ++A S Y T NY
Sbjct: 211 TKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENY 249
>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 220 YLCTVTSLLTWLLDVTCFIVWFV--LRPTFGVPLTMLGL 110
YL T T + W+ ++ F+VW V + T+ +P ++G+
Sbjct: 197 YLVTFTVAVIWMAVLSYFLVWMVAIIGYTYTIPECVMGM 235
>SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15)
Length = 194
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 484 ILQFDPQIN*SQSGQM*DRLIRECQIPQG 570
+L+F P +N GQ +RLI CQ G
Sbjct: 156 VLRFKPSVNPKDLGQEIERLIANCQSEMG 184
>SB_32108| Best HMM Match : Fz (HMM E-Value=0.00039)
Length = 188
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 12 PRAAGIRHEAKLDGPGNNSPSSGAKISTTT 101
PRAA K+ GPG N+PSS I+T +
Sbjct: 143 PRAANWPIVNKVPGPGVNTPSSKTDITTAS 172
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 345 GMNTNPTKNLEGIVVKQSVPNQRIRNTPI---RPTLSKTMKLSNELVPANTPVRPSNQ 509
G +N++GI ++V + + N P RP + K + + +L + TP PS +
Sbjct: 1739 GSKVTVWENMKGIYPTEAVLRKFVNNMPKPSGRPAIDKVLTSAAKLFKSQTPSEPSTK 1796
>SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5)
Length = 311
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 371 IFRWVRIHSLYFLRYKCTSRLNVPHFFIDSFDS 273
I RW IHSL FL+ C + N H + S+ +
Sbjct: 105 ISRWQHIHSLSFLKENCVASTN-DHPMVRSYST 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,163
Number of Sequences: 59808
Number of extensions: 366682
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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