Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0165
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    25   2.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.6  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   8.4  

>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 167 HSLVRFTSNVWCTFNDVRSLKFCRCT 90
           H L + +   WC+ +D R  K CR T
Sbjct: 229 HGLFQISDIYWCSQDDRRPGKACRVT 254


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 365  RWVRIHSLYFLRYKCTSRLNVPHFFIDSFDSFRNGRSY 252
            RW+R+H LY     C   LN P FF + +  FR G  +
Sbjct: 1544 RWLRLHDLY-----C---LNRP-FFPERYTIFRGGSQF 1572


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 76  RVQKLVQRQNFKDLTSLKVHQTLDVKRTRL 165
           ++ ++V+ +  +DLT   + + LD+   RL
Sbjct: 339 QIAEMVKPKELRDLTDANITEVLDIHLQRL 368


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,232
Number of Sequences: 2352
Number of extensions: 11761
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)