Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0165
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    29   3.8  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   3.8  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   3.8  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   3.8  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 311 LNVPHFFIDSFDSFRNGRSYFLYYCFCMRLISLYCNFFINLVTRRHL 171
           L VP FF+ +  S   G  YF+  CF +  + L+  + +  VT + L
Sbjct: 108 LYVPLFFLQTSHSLMEGLDYFI--CFSLSGVLLFLQWAVKQVTEQML 152


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 78   GAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 212
            G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 1013 GRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1057


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 78   GAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 212
            G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 1060 GRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1104


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 78   GAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 212
            G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 1013 GRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1057


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 311 LNVPHFFIDSFDSFRNGRSYFLYYCFCMRLISLYCNF-FINLVTRRHLF 168
           L+  +FF+     F +   YF YY   M L S   N+  INL  + ++F
Sbjct: 382 LDQENFFVLHLFCFYHNIKYFFYYIIFMLLFSFNLNYNQINLENKYNIF 430


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 245 YYCFCMRLISLYCNFFINLVTRRHLFHSLVRFTSNV 138
           +YC     I+LY  +F++  TR+H    L RF S++
Sbjct: 61  FYCL---FIALYTYYFLDNETRKHYVFVLSRFLSSI 93


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/81 (20%), Positives = 42/81 (51%)
 Frame = +2

Query: 203 SYSTKISDAYKNSNTRNNYDRYENYQNCQ*RSAERSI*KYIYTAKSKGNEYEPNEKSRRY 382
           S S+  S +  +S++ ++    E+ ++   + A++ + K+   A+S  +    +  S   
Sbjct: 114 SSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSS 173

Query: 383 RSEAICTESEDKKYPYQTNFK 445
            S +  +ESED+K+ ++ + K
Sbjct: 174 SSSSSSSESEDEKHHHKKHAK 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,020
Number of Sequences: 27780
Number of extensions: 272291
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)