Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0165
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08350.1 68417.m01380 KOW domain-containing transcription fac...    28   4.7  
At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (...    28   4.7  
At3g50480.1 68416.m05521 broad-spectrum mildew resistance RPW8 f...    28   6.2  

>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
           family protein chromatin structural protein homolog
           Supt5hp - Mus musculus,PID:g2754752
          Length = 1029

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 336 KVKGMNTNPTKNLEGIVVKQSVPNQRIRNTPIRPTLSKTMKLSNELVPANTPVRP 500
           +VKG +      ++ + V +   +  +  TP R T   +M     + P+ TP+ P
Sbjct: 723 EVKGNSVRVELEMKIVTVDRGAISDNVATTPFRDTSRYSMGSETPMHPSRTPLHP 777


>At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3
           (RGP3) nearly identical to reversibly glycosylated
           polypeptide-3 [Arabidopsis thaliana] GI:11863238;
           contains non-consensus GA-donor splice site at intron 2
          Length = 362

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 308 NVPHFFIDSFDSFRNGRSYFLYYCFCMR 225
           + PHFF   +D +R+G  +   Y F MR
Sbjct: 134 STPHFFNTLYDPYRDGADFVRGYPFSMR 161


>At3g50480.1 68416.m05521 broad-spectrum mildew resistance RPW8
           family protein contains Pfam PF05659: Arabidopsis
           broad-spectrum mildew resistance protein RPW8
          Length = 200

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 37  RLN*MDLEIIHQVRVQKLVQRQNFKDLTSLKVHQTLDVKRTR 162
           +L  ++LE++   R  ++ Q  + K++ +++VHQ  D+K  +
Sbjct: 108 KLESIELELVRVAREIQVHQWTDIKEMKAIQVHQWTDIKEMK 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,140
Number of Sequences: 28952
Number of extensions: 242835
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)