Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0164
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.44 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    29   0.58 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.5  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = -1

Query: 454 FAAVGLRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRW---L*RG 284
           FA+ GL+    ++ T KI  YT+  +    AIA       S ++  +  ++ W   L  G
Sbjct: 323 FASSGLKTNISTLNTGKIWGYTIGTI--CVAIASKM---GSSMLAARILKMPWSDSLVVG 377

Query: 283 SFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAF 164
           S  +   +  L  + I +  GI+ ETI + F+F   I  F
Sbjct: 378 SLMSCKGLVELIVLNIGLSTGILNETIFSMFVFMAVITTF 417


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -1

Query: 289 RGSFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAFNISVAASGHWIPFVQFPA 110
           R + +  +   +  R + +  +   T+T  A F+F    D  N+ V   G    F  FP 
Sbjct: 307 RRNLQRTYGEEISQRPFYKTRICYYTDTADAEFVFDYHPDYENLFVCTGGSGHGFKFFPI 366

Query: 109 LSSRPDGCLF 80
           L     GC+F
Sbjct: 367 LGKYSIGCMF 376


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 468 SPTAMLKLSSDSVAPKYQ*VENLVPQ 545
           SPTA++ L  +  APK+  + N+ P+
Sbjct: 767 SPTALIGLDKNLNAPKFSFISNVRPK 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,396
Number of Sequences: 5004
Number of extensions: 66221
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)