Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0164
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 350 DARNCSGFRNCVNGVGYDFV 409
           D++N  GF   V G+GYDF+
Sbjct: 251 DSQNEVGFYE-VEGIGYDFI 269


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 410 CPDGLAFNSETYRCEWPDEVADCDAE 487
           CPDGL   S+   C   D +   D +
Sbjct: 64  CPDGLKLLSDGLMCVEKDSIHSIDGD 89


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 485 QHRSRRLHQAIRSGRSQN*KPVRRDIQNRSLHRSR 381
           QH S R  +  R  R +N +  ++D Q   LH  +
Sbjct: 225 QHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEK 259


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 297 GCSEDRSRHGTSLGYWHGYTSKFTLG 220
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 297 GCSEDRSRHGTSLGYWHGYTSKFTLG 220
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 299 PQPTELCPHQFGYF 340
           P  T+ CP QFG F
Sbjct: 138 PMDTQRCPLQFGSF 151


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 297 GCSEDRSRHGTSLGYWHGYTSKFTLG 220
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 77   GTDFGSDLSVQKAGTVFVCKQRRK 6
            G+D GS      AGTV   KQ+R+
Sbjct: 1070 GSDSGSSNGSWTAGTVSQQKQKRR 1093


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 283 SFETRHFVRVLARIYIEIHVGIVTETIG 200
           +F+ +   R   RIY  IH G V  T G
Sbjct: 304 NFDIQDLERWRDRIYEAIHTGSVINTRG 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,380
Number of Sequences: 438
Number of extensions: 5244
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)