Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0164
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15060.1 68417.m02314 F-box protein-related contains weak sim...    31   0.66 
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)...    29   2.0  
At5g63790.1 68418.m08006 no apical meristem (NAM) family protein...    29   2.7  
At5g08790.1 68418.m01042 no apical meristem (NAM) family protein...    29   2.7  
At3g45880.1 68416.m04965 hypothetical protein                          29   2.7  
At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.5  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    29   3.5  
At1g01570.1 68414.m00074 fringe-related protein + similar to hyp...    28   6.2  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    27   8.2  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    27   8.2  

>At4g15060.1 68417.m02314 F-box protein-related contains weak
           similarity to F-box domain Pfam:PF00646
          Length = 572

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 146 SCDRYIECINGTAEEKLCPDGLRYNPNVNFDVYPC 250
           S  R   CI   AEE L PDG+ +N   N  + PC
Sbjct: 25  SVKRLSLCIRVNAEEALYPDGIVFNQLENLKLCPC 59


>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
           E2; identical to ubiquitin-conjugating enzyme 15
           GI:2801442 from [Arabidopsis thaliana]
          Length = 161

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 530 ELGPPAGYRYYRSDNNCQKYFLCIDGHPRVLY 625
           +L PP G+R+  +D N QK+ + + G P  LY
Sbjct: 28  QLNPPTGFRHKVTD-NLQKWTIDVTGAPGTLY 58


>At5g63790.1 68418.m08006 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           contains similarity to NAC-domain protein
          Length = 312

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 ELGPPAGYRYYRSDNNCQKYFLC 598
           EL  PAG+R++ +D    K++LC
Sbjct: 47  ELNLPAGFRFHPTDEELVKFYLC 69


>At5g08790.1 68418.m01042 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 283

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 ELGPPAGYRYYRSDNNCQKYFLC 598
           EL  PAG+R++ +D    K++LC
Sbjct: 4   ELNLPAGFRFHPTDEELVKFYLC 26


>At3g45880.1 68416.m04965 hypothetical protein
          Length = 431

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = -1

Query: 652 IVECGLTTAIEDARMPIDAQEILLAIVVRPVVSISGWGTKFSTYWY 515
           +++ GL       R+ I+A+++  A+  + V+++ G+G ++   W+
Sbjct: 384 LIQSGLIDMYRKYRLVINAEKVFRAMEGQTVLTVGGYGFEYYAEWF 429


>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 298

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 92  VRPTGQCRELNE---RYPVSGSCDRYIECINGTAE 187
           V P+G C ++NE   R+ V G C +  E + GT E
Sbjct: 252 VTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTE 286


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243  IRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN-*ATPAIAADSE 377
            +R+    + R S +PRY H++ +   P  S TS+  ATP  A+ SE
Sbjct: 1501 MRSPINRRFRASQEPRYDHQSPRPAEPAASVTSSKAATPETASVSE 1546


>At1g01570.1 68414.m00074 fringe-related protein + similar to
           hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
           + weak similarity to Fringe [Schistocerca
           gregaria](GI:6573138);Fringe encodes an extracellular
           protein that regulates Notch signalling.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 311 LSVAVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 207
           L  A+ + RIV +T +R   GT++ +N RW   GD
Sbjct: 126 LRSAIRITRIVSET-VRLLNGTELEKNVRWIVMGD 159


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 23  TQTQYQPFGQTNRFQNQ-YQEQAPVRPTG 106
           +Q  Y+P+GQ N  QNQ Y +QAP   TG
Sbjct: 72  SQISYRPYGQ-NYHQNQYYPQQAPPYFTG 99


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 302 AVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 207
           A+ + RIV +T +R   GT+  RN RW   GD
Sbjct: 154 AIRITRIVSET-VRMLNGTEAERNVRWVVMGD 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,540
Number of Sequences: 28952
Number of extensions: 362395
Number of successful extensions: 1091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)