Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0162
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.29 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   0.88 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.7  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 591 GSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPLENPSAPAI 716
           G+P  L A + AE  +PPS G S+ +   + SP E  S PA+
Sbjct: 397 GNPPDLSASNEAEATMPPSNG-SNFSEGLSASPFE--SGPAV 435


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 588 RPGSVVWIGRGLCPAVDDCG 529
           RPGS +++ R L P +D CG
Sbjct: 876 RPGSPLYLVRALIPVIDSCG 895


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 501 NKYVPSSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAA 680
           N  V ++++A+S  L    ++++ PL+P   S HP L+     V   PS   +  T S  
Sbjct: 235 NPPVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSV---PSNTINIPTDSL- 290

Query: 681 RSPLENPS 704
            S + NPS
Sbjct: 291 -SIVSNPS 297


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 510 VPSSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSP 689
           V S  +A S P     +    P  P+  +P    +  R     PP+  A +VTS + + P
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSS-RPSSFAPPAGHAPNVTSESPKFP 239

Query: 690 LENPSAPA 713
              PS P+
Sbjct: 240 NRGPSIPS 247


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 478  DTKVCMVIINMYHHHQQPTVV 540
            D   C+V++N Y+H  +P  V
Sbjct: 955  DPSYCLVLLNFYNHFSEPLFV 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,340
Number of Sequences: 5004
Number of extensions: 64016
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)