Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0162
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 34 0.099
06_01_0995 - 7733808-7734089 34 0.099
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 32 0.40
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 31 0.70
12_01_0442 + 3495333-3496484 31 0.70
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 30 2.1
01_01_0598 + 4443768-4443949,4444053-4444150,4444275-4444308,444... 30 2.1
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 29 3.7
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 29 3.7
04_01_0363 + 4754650-4755912 29 4.9
02_03_0027 + 14065720-14066328 29 4.9
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706... 28 6.5
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 28 6.5
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 28 6.5
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 6.5
01_03_0130 + 12853325-12853948,12854657-12854822,12854907-128551... 28 6.5
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 28 6.5
06_03_0299 + 19281175-19281570 28 8.6
02_05_1062 - 33834305-33834694,33835190-33835333,33835466-338355... 28 8.6
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 34.3 bits (75), Expect = 0.099
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 709 GADGFSSGDRAAEDVTWDAPWLGGTMTSARW-PARSG*GEPQTGLSGVDWERPMSSSG 539
GA GD A++ V W PW GG M ++G G P+ S + P+SSSG
Sbjct: 334 GAGWICFGDPASDLVVWQLPWCGGLMDEGGGVRGKAGSGAPKLARS----DLPLSSSG 387
>06_01_0995 - 7733808-7734089
Length = 93
Score = 34.3 bits (75), Expect = 0.099
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 543 LLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSP 689
LL +G S+S P PV + PLL G EV+ PP+ G V + SP
Sbjct: 14 LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGVLVLLSSSP 60
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 89 TSCFCSQEISIRNKIQFIKVLQLYVITKP--ARMCFHTNLPPLFGVSR*C-DKLYQAEFG 259
T+ ++IS+ +K+ + LQ Y+I P A + + P L D + QAE
Sbjct: 213 TNADTEEKISVVDKLFQFETLQSYLIPAPNQAEVTAPIHTPSLLSEPTLTEDSITQAESS 272
Query: 260 ITYHCRAC 283
+ YHC +C
Sbjct: 273 VEYHCNSC 280
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 521 INSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRPPCGGH 634
+N S +G PLP+ T P L +SS+ + P C H
Sbjct: 826 LNIDLPSASGPPPLPVMLTNPALSVSSALNGNPFCADH 863
>12_01_0442 + 3495333-3496484
Length = 383
Score = 31.5 bits (68), Expect = 0.70
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Frame = +3
Query: 495 GYNKYVPSSSTAHSRPLLDIGLSQ------STPLSPVCGSPHPLLAGHRAEVIVPPSQGA 656
G + PS A+ R +L++ Q STP P + P+ + EV+ P A
Sbjct: 290 GSPTFSPSVHAANHRQVLELRRQQRQSTNPSTPPPPPVSAAEPIPDEQKEEVVSVPVAAA 349
Query: 657 SHVTSSAARSP-----LENPSAPAIV 719
+ T A S L+ PSAP IV
Sbjct: 350 APATDGGAASSLDALLLDGPSAPLIV 375
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 525 TAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPP-----SQGASHVTSSAARSP 689
T SRP L I L PL GS P H V +PP +QG+SH S
Sbjct: 490 TTPSRPYLKIQLQ---PLRSGGGSARPGTPCHPGVVGLPPLHSVSTQGSSHPMLQRQASS 546
Query: 690 LENPSAPA 713
L PS+P+
Sbjct: 547 LSAPSSPS 554
>01_01_0598 +
4443768-4443949,4444053-4444150,4444275-4444308,
4444629-4444780,4444871-4445051,4445707-4445887,
4446034-4446142,4446324-4446451,4446758-4446832
Length = 379
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 621 RAEVIVPPSQGASHVTSSAARSPLENPSAPAIV 719
RAEV+VPP A+ T++AA S P+ P +V
Sbjct: 9 RAEVVVPPEWAAATATAAAASS---EPAPPVVV 38
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 709 GADGFSSGDRAAEDVTWDAPWLGGTMTSARWPAR 608
G G GD AA+DV D LGG M +R AR
Sbjct: 66 GGGGGGGGDAAADDVDVDLGILGGGMNVSRRHAR 99
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 513 PSSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPL 692
P+SS A P+ P + G+P P A + PPS A+ T AA +PL
Sbjct: 7 PTSSRAIGAPIQPTEPHAPLPNTGGEGAPPP------ARTMPPPSSQAATSTPPAAATPL 60
Query: 693 ENPSAPA 713
+ P A A
Sbjct: 61 QRPPAQA 67
>04_01_0363 + 4754650-4755912
Length = 420
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 637 TMTSARWPARSG*GEPQTGLSGVDWERPMSSSGRLWAV 524
T+T ARW RSG GEP+ G RP G AV
Sbjct: 187 TLTVARWEWRSG-GEPRRRRGGRGGSRPREPDGSDGAV 223
>02_03_0027 + 14065720-14066328
Length = 202
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 628 SARWPARSG*GEPQTGLSGVDWERPMSSSGRLW 530
+A WP +G G S W R S G +W
Sbjct: 2 TANWPRAAGSGWRSRSASAATWRRRASGGGEVW 34
>03_05_0371 +
23570246-23570359,23570499-23570575,23570600-23570675,
23570761-23570892,23570945-23571412,23571513-23571590,
23571693-23571809
Length = 353
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 521 INSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRPPCGGH 634
+N S +G PLP+ T P L +SS+ + C H
Sbjct: 295 LNIDLPSASGPPPLPVMLTNPALSVSSALNGNSFCADH 332
>02_05_1326 -
35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 543 LLDIGLSQSTPLSPVCGSPHPLL 611
L D +SQS + P+CGS PL+
Sbjct: 270 LSDSSISQSNNIKPICGSSAPLI 292
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 516 SSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPLE 695
SS S+P+L Q +SP P+P++AG + + P G AA + L
Sbjct: 171 SSLLGMSKPILPRAAMQLPSVSPRAIRPYPVMAGDTVK-LGAPMAGGPCAFDGAAAAGLH 229
Query: 696 NPSAP 710
S+P
Sbjct: 230 MSSSP 234
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 521 INSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRPPCGG 631
I+ ++ H PL T GL +SSS S PC G
Sbjct: 282 ISGSSNTPDDHEPLLSTTRSTGLDISSSDSSDEPCNG 318
>01_03_0130 +
12853325-12853948,12854657-12854822,12854907-12855118,
12855372-12855865,12856228-12856276,12856367-12856690
Length = 622
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 558 LSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPLENP 701
++ +TPL P C PH L G R + + + A SP P
Sbjct: 31 VATATPLFPRCPHPHHHLHGRRLPFLASAASQQQQQSGQTAASPATPP 78
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 530 PQSSTAGHRPLPIHTTEPGLRLSSSTSC 613
P +++ H PLP P LRLS+STSC
Sbjct: 10 PLAASPLHTPLPARP-RPQLRLSTSTSC 36
>06_03_0299 + 19281175-19281570
Length = 131
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +2
Query: 515 IIINSPQSSTAGHRPLPIHT-----TEPGLRLSSSTSCRPP 622
++I SP ++ GHRP+ T P L +S S RPP
Sbjct: 28 VVIESPCNNAMGHRPIAYKTAIPAGVTPSLLRWASASYRPP 68
>02_05_1062 -
33834305-33834694,33835190-33835333,33835466-33835516,
33836098-33836262,33836566-33836670,33836729-33836869
Length = 331
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 561 RGLCPAVDDCGLLMMMVHIYYNHTYLC 481
RGLC VD G+L M +H+++ C
Sbjct: 303 RGLCYTVDGFGVLKMGMHVFFGGPGQC 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,193
Number of Sequences: 37544
Number of extensions: 420872
Number of successful extensions: 1412
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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