Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0162
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 30 1.6
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_656| Best HMM Match : Pico_P2B (HMM E-Value=7.8) 29 5.0
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_12999| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-10) 28 6.6
SB_7231| Best HMM Match : Connexin43 (HMM E-Value=6.4) 28 6.6
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 28 8.8
SB_8024| Best HMM Match : GYF (HMM E-Value=4.1) 28 8.8
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 28 8.8
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 561 SQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASH-VTSSAARSPLENPSAPA 713
S+ L P + HP+ + I+PP Q ASH V + + P+ P PA
Sbjct: 827 SEKRGLPPQQPASHPVFGTTSEQPILPPQQPASHPVFGTTSEQPILPPQQPA 878
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 501 NKYVPSSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAA 680
++ +P + T S L +G Q+ + G P +AG + ++++ QG S V SS
Sbjct: 41 HRQIPQNQTKGSYNNLQLGAGQAHEI----GEPVQYIAGDKPQIVIHSPQGISRVESSMM 96
Query: 681 RS 686
S
Sbjct: 97 ES 98
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 548 GHRP--LPIHTTEPGLRLSSSTSCRPPCGG 631
G+RP LP+ T GL + +TSC P GG
Sbjct: 463 GYRPEKLPLRRTPDGLAILDNTSCGPVFGG 492
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 521 INSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRPPCGGHRTT*PGGVPRYVFRCAVSTRE 697
+N P+ T G +P PI ++ ++C PP GG P + + C S+ E
Sbjct: 599 LNMPKLDTYGSQP-PIELLRQYQDMTICSACAPPGGGRNPVTPRFLRHFSMFCIPSSAE 656
>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 513 PSSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGH 620
P S T H PLLD L TP S + P+PLL H
Sbjct: 16 PISLTGHLTPLLDTPLPYWTPHS-LTRHPYPLLDTH 50
>SB_656| Best HMM Match : Pico_P2B (HMM E-Value=7.8)
Length = 146
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 682 RAAEDVTWDAPWLGGTMTSARW 617
R +E+ TW W+GG+ RW
Sbjct: 2 RRSEEFTWIMGWIGGSQAFVRW 23
>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 603 PLLAGHRAEVIVPPSQGASHVTSSAARSP--LENPSAPA 713
P L+ + EV++PP++ S T+ + +P +E P+A A
Sbjct: 549 PELSSRKPEVVLPPAEMESSTTTQSPETPAQVETPNAVA 587
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +3
Query: 501 NKYVPSSSTAHSRPLLDIGLSQSTPLSPVCGS------PHPLLAGHRAEVIVP 641
+K PSSSTA +R LD+ S S L VC S P P H V +P
Sbjct: 103 HKSTPSSSTAPARVCLDLLRSASIALLLVCLSNDVQPYPGPQATNHATNVHLP 155
>SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 893
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +3
Query: 501 NKYVPSSSTAHSRPLLDIGLSQSTPLSPVCGS------PHPLLAGHRAEVIVP 641
+K PSSSTA +R LD+ S S L VC S P P H V +P
Sbjct: 56 HKSTPSSSTAPARVCLDLLRSASIALLLVCLSNDVQLNPGPQATNHATNVHLP 108
>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 603 PLLAGHRAEVIVPPSQGASHVTSSAARSP--LENPSAPA 713
P L+ + EV++PP++ S T+ + +P +E P+A A
Sbjct: 660 PELSSRKPEVVLPPAEMESSTTTQSPETPAQVETPNAVA 698
>SB_12999| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-10)
Length = 734
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +3
Query: 501 NKYVPSSSTAHSRPLLDIGLSQSTPLSPVCGS------PHPLLAGHRAEVIVP 641
+K PSSSTA +R LD+ S S L VC S P P H V +P
Sbjct: 324 HKSTPSSSTAPARVCLDLLRSASIALLLVCLSNDVQLNPGPQATNHATNVHLP 376
>SB_7231| Best HMM Match : Connexin43 (HMM E-Value=6.4)
Length = 148
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 603 PLLAGHRAEVIVPPSQGASHVTSSAARSP--LENPSAPA 713
P L+ + EV++PP++ S T+ + +P +E P+A A
Sbjct: 88 PELSSRKPEVVLPPAEMESSTTTQSPETPAQVETPNAVA 126
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 709 GADGFSSGDRAAEDVTWDA 653
GADGF+SG + V WDA
Sbjct: 9 GADGFASGSKDGTVVLWDA 27
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 595 EPQTGLSGVDWERPMSSSGRLWAVDDDG 512
+PQ +S VDW+RP SG+ W + G
Sbjct: 1134 QPQNTVS-VDWDRPEVDSGKSWLLPIGG 1160
>SB_8024| Best HMM Match : GYF (HMM E-Value=4.1)
Length = 305
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 45 MAQWYGRNGSMVRAKWLNGTGEMAQWYGRNGSMVRAKW 82
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 89 MAQWYGRNGSMVRAKWLNGTGEMAQWYGRNGSMVRAKW 126
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 111 MAQWYGRNGSMVRAKWLNGTGEMAQWYGRNGSMVRAKW 148
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 186 MAQWYGRNGSMVRAKWLNGTGEMAQWYGRNGSMVRAKW 223
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 208 MAQWYGRNGSMVRAKWLNGTGEMAQWYGRNGSMVRAKW 245
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCGLGEAYVQ-QW 540
+A+WY ++ KW+ + AQW G + V+ +W
Sbjct: 230 MAQWYGRNGSMVRAKWLNGTGEMAQWYGQNGSMVRAKW 267
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 650 LARWYDDLRTVAGKKWMRRAADRAQWCG 567
+A+WY ++ KW+ + AQW G
Sbjct: 252 MAQWYGQNGSMVRAKWLNGTGEMAQWYG 279
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 549 DIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPS 647
D ++ P++P SP P L +A++ PPS
Sbjct: 1161 DTPMNPKMPVAPTYMSPQPQLVARKAQINEPPS 1193
>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 549 DIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPS 647
D ++ P++P SP P L +A++ PPS
Sbjct: 570 DTPMNPKMPVAPTYMSPQPQLVARKAQINEPPS 602
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,803,613
Number of Sequences: 59808
Number of extensions: 500543
Number of successful extensions: 1253
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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