Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0162
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 44 1e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 44 1e-04
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 42 3e-04
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 41 0.001
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 33 0.21
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 29 3.3
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = -1
Query: 719 DDRWSRRVLEWRPRSGRRNVGRPLARWYDDLRTVAGKK---------WMRRAADRAQW 573
D RW+ + EWRP +R VGRP RW D LR + W A DR QW
Sbjct: 998 DGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 1055
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = -1
Query: 719 DDRWSRRVLEWRPRSGRRNVGRPLARWYDDLRTVAGKK---------WMRRAADRAQW 573
D RW+ + EWRP +R VGRP RW D LR + W A DR QW
Sbjct: 737 DGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 794
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -1
Query: 719 DDRWSRRVLEWRPRSGRRNVGRPLARWYDDLR 624
D RW+ + EWRP +R VGRP RW D LR
Sbjct: 823 DGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 854
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -1
Query: 719 DDRWSRRVLEWRPRSGRRNVGRPLARWYDDLR 624
D RW+ + EWRP +R VGRP RW D LR
Sbjct: 349 DGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 380
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = -1
Query: 719 DDRWSRRVLEWRPRSGRRNVGRPLARWYDDLRTVAGKK---------WMRRAADRAQW 573
D RW+ + +W PR +R VGRP RW D LR + W +A DR W
Sbjct: 134 DGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAW 191
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 LSPVCGSPHPLLAGHRAEVIVPPSQGASH--VTSSAARSPLENPSAP 710
+ PVC +P P + H + I+ P + +S VTS + R+ L++ S P
Sbjct: 154 IEPVCANPRPEVFWHTTDGIITPEKASSRFAVTSLSQRTTLKHRSDP 200
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 31.1 bits (67), Expect = 0.83
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 498 YNKYVPSSSTAHSRPLLDIGLSQSTP-LSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSS 674
YN+ VPS T+H PLL S TP +SP + P +G + P + S S
Sbjct: 642 YNRMVPSQ-TSHGPPLLSRSQSMHTPMISPNFNASQPSTSGRQ-----PAKKARS--ASD 693
Query: 675 AARSPLENPSAPA 713
A+ P P P+
Sbjct: 694 ASEPPFNVPHPPS 706
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 31.1 bits (67), Expect = 0.83
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 498 YNKYVPSSSTAHSRPLLDIGLSQSTP-LSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSS 674
YN+ VPS T+H PLL S TP +SP + P +G + P + S S
Sbjct: 642 YNRMVPSQ-TSHGPPLLSRSQSMHTPMISPNFNASQPSTSGRQ-----PAKKARS--ASD 693
Query: 675 AARSPLENPSAPA 713
A+ P P P+
Sbjct: 694 ASEPPFNVPHPPS 706
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 615 GHRAEVIVPPSQGASHVTSSAARSPLENPSAPA 713
G RA P S T S RSP + PSAPA
Sbjct: 383 GARAPSRAPAPSSTSRETRSTRRSPSKGPSAPA 415
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,779
Number of Sequences: 27780
Number of extensions: 363251
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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