Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0162
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 596 SSSTSCRPPCGGHRTT*PGGVPRYVFRCAVST 691
           +S      PC       PGGVP  V + A S+
Sbjct: 385 ASGAQFATPCTPSPPRGPGGVPTSVIQAATSS 416


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 489 MYGYNKYVPSSS-TAHSRPLLDIGLSQSTPL 578
           M+G+N+YVP  + TA      + GL  ++ L
Sbjct: 187 MFGWNRYVPEGNMTACGTDYFNRGLLSASYL 217


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  YYVNLTCDMRSRYSSN 90
           YYVN+   M+S+Y  N
Sbjct: 277 YYVNMEPFMKSQYEEN 292


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 489 MYGYNKYVPSSS-TAHSRPLLDIGLSQSTPL 578
           M+G+N+YVP  + TA      + GL  ++ L
Sbjct: 63  MFGWNRYVPEGNMTACGTDYFNRGLLSASYL 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,562
Number of Sequences: 438
Number of extensions: 4593
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)